Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 DDX43P3-201ENST00000441064 443 ntBASIC16.5■□□□□ 0.23
VMP1Q96GC9 SAPCD2P3-201ENST00000455031 850 ntBASIC16.5■□□□□ 0.23
VMP1Q96GC9 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 REXO1L6P-202ENST00000619970 1078 ntBASIC16.5■□□□□ 0.23
VMP1Q96GC9 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 EMBP1-201ENST00000458200 901 ntBASIC16.49■□□□□ 0.23
VMP1Q96GC9 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 AC122714.2-201ENST00000502787 707 ntBASIC16.49■□□□□ 0.23
VMP1Q96GC9 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 AC010460.3-201ENST00000511359 1579 ntBASIC16.49■□□□□ 0.23
VMP1Q96GC9 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 AL121894.2-201ENST00000602977 491 ntBASIC16.49■□□□□ 0.23
VMP1Q96GC9 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VMP1Q96GC9 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VMP1Q96GC9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.48■□□□□ 0.23
VMP1Q96GC9 C8orf49-201ENST00000525043 1968 ntBASIC16.48■□□□□ 0.23
VMP1Q96GC9 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
VMP1Q96GC9 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
VMP1Q96GC9 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 AC132008.2-207ENST00000454517 770 ntBASIC16.48■□□□□ 0.23
VMP1Q96GC9 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
VMP1Q96GC9 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.48■□□□□ 0.23
VMP1Q96GC9 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.48■□□□□ 0.23
VMP1Q96GC9 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VMP1Q96GC9 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms