Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC011447.5-201ENST00000616168 564 ntBASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 FUZ-207ENST00000526575 482 ntTSL 4 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 AC007431.3-201ENST00000623221 587 ntBASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMC1BQ8NDV3 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 AL023806.1-201ENST00000603994 1649 ntBASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 NEU3-203ENST00000529024 581 ntTSL 3 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 SNX29P1-201ENST00000548357 1007 ntBASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 AL035456.1-201ENST00000456064 1369 ntBASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.18■□□□□ 0.82
SMC1BQ8NDV3 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 RN7SL190P-201ENST00000582519 257 ntBASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMC1BQ8NDV3 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms