Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
LHX1P48742 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.11■□□□□ 0.49
LHX1P48742 AL513480.1-201ENST00000451731 511 ntBASIC18.11■□□□□ 0.49
LHX1P48742 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.11■□□□□ 0.49
LHX1P48742 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.11■□□□□ 0.49
LHX1P48742 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.11■□□□□ 0.49
LHX1P48742 AC124947.2-201ENST00000547118 1133 ntBASIC18.11■□□□□ 0.49
LHX1P48742 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.11■□□□□ 0.49
LHX1P48742 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.11■□□□□ 0.49
LHX1P48742 PDPK2P-202ENST00000562415 1191 ntBASIC18.11■□□□□ 0.49
LHX1P48742 MIR3687-2-201ENST00000577708 61 ntBASIC18.11■□□□□ 0.49
LHX1P48742 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 MIR3687-1-201ENST00000614492 61 ntBASIC18.11■□□□□ 0.49
LHX1P48742 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.11■□□□□ 0.49
LHX1P48742 AL513190.1-201ENST00000621254 727 ntBASIC18.11■□□□□ 0.49
LHX1P48742 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.11■□□□□ 0.49
LHX1P48742 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.11■□□□□ 0.49
LHX1P48742 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LHX1P48742 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.11■□□□□ 0.49
LHX1P48742 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.11■□□□□ 0.49
LHX1P48742 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 AC141586.5-201ENST00000624546 2050 ntBASIC18.11■□□□□ 0.49
LHX1P48742 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.11■□□□□ 0.49
LHX1P48742 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.11■□□□□ 0.49
LHX1P48742 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LHX1P48742 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LHX1P48742 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LHX1P48742 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
LHX1P48742 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LHX1P48742 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.1■□□□□ 0.49
LHX1P48742 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
LHX1P48742 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.1■□□□□ 0.49
LHX1P48742 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
LHX1P48742 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LHX1P48742 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.1■□□□□ 0.49
LHX1P48742 AC025580.3-201ENST00000617932 1424 ntBASIC18.1■□□□□ 0.49
LHX1P48742 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
LHX1P48742 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LHX1P48742 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.1■□□□□ 0.49
LHX1P48742 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.1■□□□□ 0.49
LHX1P48742 UPF3AP3-201ENST00000420996 769 ntBASIC18.1■□□□□ 0.49
LHX1P48742 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.1■□□□□ 0.49
LHX1P48742 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.1■□□□□ 0.49
LHX1P48742 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.1■□□□□ 0.49
LHX1P48742 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LHX1P48742 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.1■□□□□ 0.49
LHX1P48742 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.1■□□□□ 0.49
LHX1P48742 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LHX1P48742 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LHX1P48742 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
LHX1P48742 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
LHX1P48742 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LHX1P48742 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
LHX1P48742 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LHX1P48742 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LHX1P48742 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LHX1P48742 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LHX1P48742 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
LHX1P48742 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 AL021920.2-201ENST00000624828 1351 ntBASIC18.09■□□□□ 0.49
LHX1P48742 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
LHX1P48742 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.09■□□□□ 0.49
LHX1P48742 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.09■□□□□ 0.49
LHX1P48742 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.09■□□□□ 0.49
LHX1P48742 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
LHX1P48742 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.09■□□□□ 0.49
LHX1P48742 AC005412.3-201ENST00000580309 715 ntBASIC18.09■□□□□ 0.49
LHX1P48742 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.09■□□□□ 0.49
LHX1P48742 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
LHX1P48742 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.09■□□□□ 0.49
LHX1P48742 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
LHX1P48742 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LHX1P48742 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.09■□□□□ 0.49
LHX1P48742 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
LHX1P48742 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.08■□□□□ 0.49
LHX1P48742 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.08■□□□□ 0.49
LHX1P48742 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
LHX1P48742 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LHX1P48742 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.08■□□□□ 0.49
LHX1P48742 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms