Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 BX276092.5-203ENST00000456199 560 ntBASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 AL121672.3-201ENST00000608644 468 ntBASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC39Q9UFE4 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 AC011840.4-201ENST00000578471 627 ntBASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC39Q9UFE4 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC39Q9UFE4 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms