Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 AL590787.1-201ENST00000568856 1315 ntBASIC13.3□□□□□ -0.28
CCDC140Q96MF4 HNRNPRP1-201ENST00000453465 1695 ntBASIC13.3□□□□□ -0.28
CCDC140Q96MF4 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC140Q96MF4 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 AC005915.1-201ENST00000624912 2018 ntBASIC13.29□□□□□ -0.28
CCDC140Q96MF4 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 NABP1-203ENST00000409510 843 ntTSL 5 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 CYGB-205ENST00000590175 830 ntTSL 3 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 AL121912.1-201ENST00000603683 238 ntBASIC13.29□□□□□ -0.28
CCDC140Q96MF4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 AL691432.3-201ENST00000621860 400 ntBASIC13.29□□□□□ -0.28
CCDC140Q96MF4 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC140Q96MF4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 AC004870.1-201ENST00000315132 882 ntBASIC13.28□□□□□ -0.28
CCDC140Q96MF4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 LAGE3P1-201ENST00000425356 484 ntBASIC13.28□□□□□ -0.28
CCDC140Q96MF4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 AC079781.3-201ENST00000449110 356 ntBASIC13.28□□□□□ -0.28
CCDC140Q96MF4 AC073648.2-201ENST00000510116 352 ntBASIC13.28□□□□□ -0.28
CCDC140Q96MF4 KRT126P-201ENST00000549467 1181 ntBASIC13.28□□□□□ -0.28
CCDC140Q96MF4 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 AC004706.3-202ENST00000621574 984 ntBASIC13.28□□□□□ -0.28
CCDC140Q96MF4 AC107918.4-202ENST00000641623 219 ntBASIC13.28□□□□□ -0.28
CCDC140Q96MF4 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 AC105020.1-201ENST00000435356 2205 ntBASIC13.28□□□□□ -0.28
CCDC140Q96MF4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC140Q96MF4 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC140Q96MF4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC13.27□□□□□ -0.28
CCDC140Q96MF4 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC140Q96MF4 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC13.27□□□□□ -0.28
CCDC140Q96MF4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC140Q96MF4 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC13.27□□□□□ -0.28
CCDC140Q96MF4 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC140Q96MF4 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC140Q96MF4 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC13.27□□□□□ -0.28
CCDC140Q96MF4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms