Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
RTF1Q92541 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC22.35■■□□□ 1.17
RTF1Q92541 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC22.35■■□□□ 1.17
RTF1Q92541 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC22.35■■□□□ 1.17
RTF1Q92541 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC22.35■■□□□ 1.17
RTF1Q92541 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
RTF1Q92541 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
RTF1Q92541 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC22.35■■□□□ 1.17
RTF1Q92541 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
RTF1Q92541 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
RTF1Q92541 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC22.34■■□□□ 1.17
RTF1Q92541 REM2-202ENST00000536884 1331 ntTSL 2 BASIC22.34■■□□□ 1.17
RTF1Q92541 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC22.34■■□□□ 1.17
RTF1Q92541 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
RTF1Q92541 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 AC067852.2-201ENST00000590513 2313 ntBASIC22.34■■□□□ 1.17
RTF1Q92541 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 AL133373.2-201ENST00000623187 2828 ntBASIC22.34■■□□□ 1.17
RTF1Q92541 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC22.34■■□□□ 1.17
RTF1Q92541 YBX1P5-201ENST00000509441 847 ntBASIC22.34■■□□□ 1.17
RTF1Q92541 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
RTF1Q92541 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC22.34■■□□□ 1.17
RTF1Q92541 MIR4469-201ENST00000583919 79 ntBASIC22.34■■□□□ 1.17
RTF1Q92541 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC22.34■■□□□ 1.17
RTF1Q92541 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC22.34■■□□□ 1.17
RTF1Q92541 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC22.34■■□□□ 1.17
RTF1Q92541 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC22.34■■□□□ 1.17
RTF1Q92541 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTF1Q92541 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
RTF1Q92541 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
RTF1Q92541 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC22.33■■□□□ 1.17
RTF1Q92541 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RTF1Q92541 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC22.33■■□□□ 1.17
RTF1Q92541 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
RTF1Q92541 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RTF1Q92541 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RTF1Q92541 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RTF1Q92541 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
RTF1Q92541 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC22.33■■□□□ 1.17
RTF1Q92541 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RTF1Q92541 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
RTF1Q92541 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC22.33■■□□□ 1.17
RTF1Q92541 MKNK2P1-201ENST00000437526 628 ntBASIC22.33■■□□□ 1.17
RTF1Q92541 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
RTF1Q92541 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC22.33■■□□□ 1.17
RTF1Q92541 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC22.33■■□□□ 1.17
RTF1Q92541 AC107918.2-201ENST00000530817 355 ntBASIC22.33■■□□□ 1.17
RTF1Q92541 MED16-214ENST00000617672 554 ntTSL 5 BASIC22.33■■□□□ 1.17
RTF1Q92541 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC22.33■■□□□ 1.17
RTF1Q92541 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC22.33■■□□□ 1.17
RTF1Q92541 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC22.33■■□□□ 1.16
RTF1Q92541 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.16
RTF1Q92541 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC22.33■■□□□ 1.16
RTF1Q92541 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
RTF1Q92541 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
RTF1Q92541 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC22.32■■□□□ 1.16
RTF1Q92541 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC22.32■■□□□ 1.16
RTF1Q92541 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RTF1Q92541 BOC-212ENST00000485230 2173 ntTSL 2 BASIC22.32■■□□□ 1.16
RTF1Q92541 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
RTF1Q92541 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RTF1Q92541 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RTF1Q92541 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RTF1Q92541 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RTF1Q92541 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RTF1Q92541 CD82-202ENST00000342935 967 ntTSL 5 BASIC22.32■■□□□ 1.16
RTF1Q92541 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RTF1Q92541 AC092183.1-201ENST00000469884 875 ntBASIC22.32■■□□□ 1.16
RTF1Q92541 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
RTF1Q92541 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
RTF1Q92541 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC22.32■■□□□ 1.16
RTF1Q92541 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC22.32■■□□□ 1.16
RTF1Q92541 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RTF1Q92541 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RTF1Q92541 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC22.31■■□□□ 1.16
RTF1Q92541 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RTF1Q92541 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC22.31■■□□□ 1.16
RTF1Q92541 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC22.31■■□□□ 1.16
RTF1Q92541 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RTF1Q92541 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
RTF1Q92541 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RTF1Q92541 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RTF1Q92541 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RTF1Q92541 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms