Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SLC44A3Q8N4M1 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 ALG1L8P-201ENST00000533887 760 ntBASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 MIR6080-201ENST00000617359 66 ntBASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SLC44A3Q8N4M1 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 AC092580.3-201ENST00000430932 139 ntBASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 CR383656.12-201ENST00000549567 513 ntBASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 AC027307.3-201ENST00000594262 1100 ntBASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 AL358472.5-202ENST00000641448 1267 ntBASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 GNAS-203ENST00000306120 1878 ntBASIC17.48■□□□□ 0.39
SLC44A3Q8N4M1 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 AC109635.5-201ENST00000533593 962 ntBASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 AL008721.1-201ENST00000609964 604 ntBASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms