Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC13.9□□□□□ -0.18
CX3CL1P78423 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC13.9□□□□□ -0.18
CX3CL1P78423 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CL1P78423 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CX3CL1P78423 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CL1P78423 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CL1P78423 AC008894.3-201ENST00000624324 3103 ntBASIC13.9□□□□□ -0.18
CX3CL1P78423 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CX3CL1P78423 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC13.9□□□□□ -0.18
CX3CL1P78423 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC13.9□□□□□ -0.18
CX3CL1P78423 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC13.9□□□□□ -0.18
CX3CL1P78423 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CX3CL1P78423 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
CX3CL1P78423 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC13.9□□□□□ -0.19
CX3CL1P78423 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
CX3CL1P78423 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CX3CL1P78423 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CX3CL1P78423 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC13.89□□□□□ -0.19
CX3CL1P78423 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.89□□□□□ -0.19
CX3CL1P78423 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CX3CL1P78423 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.89□□□□□ -0.19
CX3CL1P78423 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CL1P78423 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CL1P78423 AL353593.2-201ENST00000602529 1483 ntBASIC13.89□□□□□ -0.19
CX3CL1P78423 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CX3CL1P78423 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC13.89□□□□□ -0.19
CX3CL1P78423 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC13.89□□□□□ -0.19
CX3CL1P78423 NKTR-203ENST00000442970 646 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CL1P78423 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC13.89□□□□□ -0.19
CX3CL1P78423 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC13.89□□□□□ -0.19
CX3CL1P78423 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CL1P78423 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC13.89□□□□□ -0.19
CX3CL1P78423 PRR29-207ENST00000580752 458 ntTSL 3 BASIC13.89□□□□□ -0.19
CX3CL1P78423 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC13.89□□□□□ -0.19
CX3CL1P78423 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CL1P78423 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CX3CL1P78423 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CL1P78423 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC13.89□□□□□ -0.19
CX3CL1P78423 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC13.89□□□□□ -0.19
CX3CL1P78423 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 TPR-209ENST00000613151 2478 ntTSL 5 BASIC13.88□□□□□ -0.19
CX3CL1P78423 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC13.88□□□□□ -0.19
CX3CL1P78423 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC13.88□□□□□ -0.19
CX3CL1P78423 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC13.88□□□□□ -0.19
CX3CL1P78423 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CX3CL1P78423 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13.88□□□□□ -0.19
CX3CL1P78423 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC13.88□□□□□ -0.19
CX3CL1P78423 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC13.88□□□□□ -0.19
CX3CL1P78423 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC13.88□□□□□ -0.19
CX3CL1P78423 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC13.88□□□□□ -0.19
CX3CL1P78423 PRELID1P1-202ENST00000567272 903 ntBASIC13.88□□□□□ -0.19
CX3CL1P78423 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CX3CL1P78423 AL121772.3-201ENST00000610840 674 ntBASIC13.88□□□□□ -0.19
CX3CL1P78423 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC13.88□□□□□ -0.19
CX3CL1P78423 AD001527.2-201ENST00000622994 785 ntBASIC13.88□□□□□ -0.19
CX3CL1P78423 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC13.88□□□□□ -0.19
CX3CL1P78423 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CX3CL1P78423 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CX3CL1P78423 FUT8-AS1-201ENST00000621019 1521 ntBASIC13.88□□□□□ -0.19
CX3CL1P78423 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CX3CL1P78423 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms