Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.04■□□□□ 0.48
APOEP02649 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.04■□□□□ 0.48
APOEP02649 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.04■□□□□ 0.48
APOEP02649 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.04■□□□□ 0.48
APOEP02649 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.04■□□□□ 0.48
APOEP02649 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.04■□□□□ 0.48
APOEP02649 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.04■□□□□ 0.48
APOEP02649 AC139887.3-201ENST00000568585 713 ntBASIC18.04■□□□□ 0.48
APOEP02649 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.04■□□□□ 0.48
APOEP02649 AL589182.2-201ENST00000619332 1049 ntBASIC18.04■□□□□ 0.48
APOEP02649 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.04■□□□□ 0.48
APOEP02649 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.04■□□□□ 0.48
APOEP02649 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
APOEP02649 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
APOEP02649 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 AC097637.2-201ENST00000624096 1997 ntBASIC18.04■□□□□ 0.48
APOEP02649 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.04■□□□□ 0.48
APOEP02649 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.03■□□□□ 0.48
APOEP02649 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.03■□□□□ 0.48
APOEP02649 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.03■□□□□ 0.48
APOEP02649 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.03■□□□□ 0.48
APOEP02649 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.03■□□□□ 0.48
APOEP02649 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.03■□□□□ 0.48
APOEP02649 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.03■□□□□ 0.48
APOEP02649 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.03■□□□□ 0.48
APOEP02649 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.03■□□□□ 0.48
APOEP02649 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 AC079776.4-201ENST00000511039 504 ntBASIC18.03■□□□□ 0.48
APOEP02649 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.03■□□□□ 0.48
APOEP02649 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
APOEP02649 AC006557.2-201ENST00000592985 1240 ntBASIC18.03■□□□□ 0.48
APOEP02649 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.03■□□□□ 0.48
APOEP02649 FAM215A-202ENST00000632077 792 ntBASIC18.03■□□□□ 0.48
APOEP02649 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.03■□□□□ 0.48
APOEP02649 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.03■□□□□ 0.48
APOEP02649 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
APOEP02649 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
APOEP02649 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.03■□□□□ 0.48
APOEP02649 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
APOEP02649 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
APOEP02649 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.03■□□□□ 0.48
APOEP02649 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.02■□□□□ 0.48
APOEP02649 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
APOEP02649 NFIC-211ENST00000641145 8399 ntBASIC18.02■□□□□ 0.48
APOEP02649 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
APOEP02649 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
APOEP02649 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
APOEP02649 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
APOEP02649 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
APOEP02649 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
APOEP02649 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
APOEP02649 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
APOEP02649 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
APOEP02649 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.02■□□□□ 0.48
APOEP02649 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.02■□□□□ 0.48
APOEP02649 HNRNPDP1-201ENST00000439535 754 ntBASIC18.02■□□□□ 0.48
APOEP02649 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.02■□□□□ 0.48
APOEP02649 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.02■□□□□ 0.48
APOEP02649 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
APOEP02649 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
APOEP02649 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
APOEP02649 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.02■□□□□ 0.48
APOEP02649 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.02■□□□□ 0.48
APOEP02649 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
APOEP02649 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.02■□□□□ 0.48
APOEP02649 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.02■□□□□ 0.48
APOEP02649 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.02■□□□□ 0.48
APOEP02649 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
APOEP02649 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.02■□□□□ 0.47
APOEP02649 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
APOEP02649 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
APOEP02649 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
APOEP02649 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.02■□□□□ 0.47
APOEP02649 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms