Protein–RNA interactions for Protein: O43541

SMAD6, Mothers against decapentaplegic homolog 6, humanhuman

Known RBP Predictions only

Length 496 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6O43541 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.31■□□□□ 0.36
SMAD6O43541 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SMAD6O43541 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.31■□□□□ 0.36
SMAD6O43541 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SMAD6O43541 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
SMAD6O43541 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SMAD6O43541 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.31■□□□□ 0.36
SMAD6O43541 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 YBX2P1-201ENST00000394192 760 ntBASIC17.31■□□□□ 0.36
SMAD6O43541 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.31■□□□□ 0.36
SMAD6O43541 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.31■□□□□ 0.36
SMAD6O43541 KRT18P13-201ENST00000400056 1290 ntBASIC17.31■□□□□ 0.36
SMAD6O43541 FAM185BP-201ENST00000443595 716 ntBASIC17.31■□□□□ 0.36
SMAD6O43541 AC107918.2-201ENST00000530817 355 ntBASIC17.31■□□□□ 0.36
SMAD6O43541 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 ACTL9-202ENST00000612068 1252 ntBASIC17.31■□□□□ 0.36
SMAD6O43541 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.31■□□□□ 0.36
SMAD6O43541 AC004877.2-201ENST00000623941 599 ntBASIC17.31■□□□□ 0.36
SMAD6O43541 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.31■□□□□ 0.36
SMAD6O43541 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.31■□□□□ 0.36
SMAD6O43541 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.31■□□□□ 0.36
SMAD6O43541 AC092053.1-201ENST00000605787 1936 ntBASIC17.31■□□□□ 0.36
SMAD6O43541 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 FRMD8P1-201ENST00000440433 1524 ntBASIC17.31■□□□□ 0.36
SMAD6O43541 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.31■□□□□ 0.36
SMAD6O43541 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMAD6O43541 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.3■□□□□ 0.36
SMAD6O43541 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMAD6O43541 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMAD6O43541 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SMAD6O43541 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.3■□□□□ 0.36
SMAD6O43541 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SMAD6O43541 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMAD6O43541 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.3■□□□□ 0.36
SMAD6O43541 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.3■□□□□ 0.36
SMAD6O43541 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.3■□□□□ 0.36
SMAD6O43541 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMAD6O43541 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMAD6O43541 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SMAD6O43541 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.3■□□□□ 0.36
SMAD6O43541 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.3■□□□□ 0.36
SMAD6O43541 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.3■□□□□ 0.36
SMAD6O43541 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMAD6O43541 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SMAD6O43541 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMAD6O43541 AL645608.8-201ENST00000606034 2086 ntBASIC17.3■□□□□ 0.36
SMAD6O43541 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMAD6O43541 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMAD6O43541 LINC02012-201ENST00000608206 1725 ntBASIC17.3■□□□□ 0.36
SMAD6O43541 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.29■□□□□ 0.36
SMAD6O43541 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 BCAR1-209ENST00000546196 1340 ntBASIC17.29■□□□□ 0.36
SMAD6O43541 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.29■□□□□ 0.36
SMAD6O43541 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
SMAD6O43541 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.29■□□□□ 0.36
SMAD6O43541 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.29■□□□□ 0.36
SMAD6O43541 AC004832.2-201ENST00000426397 482 ntBASIC17.29■□□□□ 0.36
SMAD6O43541 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.29■□□□□ 0.36
SMAD6O43541 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.29■□□□□ 0.36
SMAD6O43541 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
SMAD6O43541 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.29■□□□□ 0.36
SMAD6O43541 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.29■□□□□ 0.36
SMAD6O43541 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.29■□□□□ 0.36
SMAD6O43541 AC002347.1-201ENST00000569543 541 ntBASIC17.29■□□□□ 0.36
SMAD6O43541 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 REXO1L3P-201ENST00000622202 1288 ntBASIC17.29■□□□□ 0.36
SMAD6O43541 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.29■□□□□ 0.36
SMAD6O43541 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMAD6O43541 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SMAD6O43541 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.29■□□□□ 0.36
SMAD6O43541 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SMAD6O43541 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SMAD6O43541 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms