Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MSH4O15457 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
MSH4O15457 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.23■□□□□ 0.67
MSH4O15457 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.23■□□□□ 0.67
MSH4O15457 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.23■□□□□ 0.67
MSH4O15457 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.23■□□□□ 0.67
MSH4O15457 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
MSH4O15457 FAM185BP-201ENST00000443595 716 ntBASIC19.23■□□□□ 0.67
MSH4O15457 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
MSH4O15457 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.23■□□□□ 0.67
MSH4O15457 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.23■□□□□ 0.67
MSH4O15457 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.23■□□□□ 0.67
MSH4O15457 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.23■□□□□ 0.67
MSH4O15457 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.23■□□□□ 0.67
MSH4O15457 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.23■□□□□ 0.67
MSH4O15457 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
MSH4O15457 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.23■□□□□ 0.67
MSH4O15457 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.23■□□□□ 0.67
MSH4O15457 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.23■□□□□ 0.67
MSH4O15457 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSH4O15457 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
MSH4O15457 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.22■□□□□ 0.67
MSH4O15457 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH4O15457 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH4O15457 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH4O15457 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
MSH4O15457 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.22■□□□□ 0.67
MSH4O15457 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 CXCL1P1-201ENST00000502804 216 ntBASIC19.22■□□□□ 0.67
MSH4O15457 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH4O15457 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 AC124947.2-201ENST00000547118 1133 ntBASIC19.22■□□□□ 0.67
MSH4O15457 AC096734.2-201ENST00000562054 433 ntBASIC19.22■□□□□ 0.67
MSH4O15457 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.22■□□□□ 0.67
MSH4O15457 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.22■□□□□ 0.67
MSH4O15457 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 ACTL9-202ENST00000612068 1252 ntBASIC19.22■□□□□ 0.67
MSH4O15457 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH4O15457 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSH4O15457 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSH4O15457 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.22■□□□□ 0.67
MSH4O15457 AP001094.4-201ENST00000579008 2176 ntBASIC19.22■□□□□ 0.67
MSH4O15457 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSH4O15457 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.22■□□□□ 0.67
MSH4O15457 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.21■□□□□ 0.67
MSH4O15457 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.21■□□□□ 0.67
MSH4O15457 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.21■□□□□ 0.67
MSH4O15457 RHOQP3-201ENST00000437982 621 ntBASIC19.21■□□□□ 0.67
MSH4O15457 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.21■□□□□ 0.67
MSH4O15457 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.21■□□□□ 0.67
MSH4O15457 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.21■□□□□ 0.67
MSH4O15457 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
MSH4O15457 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.21■□□□□ 0.67
MSH4O15457 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.21■□□□□ 0.67
MSH4O15457 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.21■□□□□ 0.67
MSH4O15457 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.21■□□□□ 0.67
MSH4O15457 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
MSH4O15457 AC026471.1-201ENST00000564629 3026 ntBASIC19.21■□□□□ 0.67
MSH4O15457 AC129492.6-201ENST00000611383 1305 ntBASIC19.21■□□□□ 0.67
MSH4O15457 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.21■□□□□ 0.67
MSH4O15457 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSH4O15457 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH4O15457 AC092068.3-201ENST00000587894 2016 ntBASIC19.2■□□□□ 0.66
MSH4O15457 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
MSH4O15457 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.2■□□□□ 0.66
MSH4O15457 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms