Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 AC006058.3-201ENST00000606217 1069 ntBASIC12.62□□□□□ -0.39
SMKR1H3BMG3 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 AL365209.1-201ENST00000624418 6473 ntBASIC12.62□□□□□ -0.39
SMKR1H3BMG3 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 AC005104.2-201ENST00000427818 678 ntBASIC12.61□□□□□ -0.39
SMKR1H3BMG3 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 AC116562.2-201ENST00000507042 360 ntBASIC12.61□□□□□ -0.39
SMKR1H3BMG3 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SMKR1H3BMG3 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 PBK-203ENST00000522944 1499 ntTSL 2 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms