Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 TP73-AS1-207ENST00000624167 988 ntBASIC16.71■□□□□ 0.27
VPS4AQ9UN37 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 ZNF259P1-201ENST00000407656 1365 ntBASIC16.71■□□□□ 0.27
VPS4AQ9UN37 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS4AQ9UN37 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 AL121761.2-201ENST00000598007 1648 ntBASIC16.7■□□□□ 0.26
VPS4AQ9UN37 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
VPS4AQ9UN37 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 AC011676.5-201ENST00000624864 2660 ntBASIC16.69■□□□□ 0.26
VPS4AQ9UN37 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 IGHGP-201ENST00000390555 1178 ntBASIC16.69■□□□□ 0.26
VPS4AQ9UN37 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 POM121L3P-201ENST00000419331 1163 ntBASIC16.69■□□□□ 0.26
VPS4AQ9UN37 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 RNA5SP419-201ENST00000515908 135 ntBASIC16.69■□□□□ 0.26
VPS4AQ9UN37 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 AC011840.4-201ENST00000578471 627 ntBASIC16.69■□□□□ 0.26
VPS4AQ9UN37 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.69■□□□□ 0.26
VPS4AQ9UN37 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4AQ9UN37 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
VPS4AQ9UN37 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS4AQ9UN37 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4AQ9UN37 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
VPS4AQ9UN37 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms