Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 AC106028.4-201ENST00000614509 607 ntBASIC17.64■□□□□ 0.41
TDP1Q9NUW8 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 AC093028.1-201ENST00000622998 982 ntBASIC17.64■□□□□ 0.41
TDP1Q9NUW8 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TDP1Q9NUW8 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 AL355306.1-201ENST00000415580 579 ntBASIC17.63■□□□□ 0.41
TDP1Q9NUW8 AL671277.1-201ENST00000429656 993 ntBASIC17.63■□□□□ 0.41
TDP1Q9NUW8 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 AC005412.3-201ENST00000580309 715 ntBASIC17.63■□□□□ 0.41
TDP1Q9NUW8 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 AC026120.1-201ENST00000611536 926 ntBASIC17.63■□□□□ 0.41
TDP1Q9NUW8 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 AL390961.4-201ENST00000623958 2535 ntBASIC17.63■□□□□ 0.41
TDP1Q9NUW8 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
TDP1Q9NUW8 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 TIMM8BP1-201ENST00000452384 211 ntBASIC17.62■□□□□ 0.41
TDP1Q9NUW8 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 HLA-J-203ENST00000494367 1087 ntBASIC17.62■□□□□ 0.41
TDP1Q9NUW8 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 AC099522.2-201ENST00000607001 744 ntBASIC17.62■□□□□ 0.41
TDP1Q9NUW8 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TDP1Q9NUW8 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 AC023141.5-201ENST00000458585 616 ntBASIC17.61■□□□□ 0.41
TDP1Q9NUW8 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 198.8 ms