Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 AL592309.1-201ENST00000443127 649 ntBASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 COX20P2-201ENST00000452636 358 ntBASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 RN7SL589P-201ENST00000481268 310 ntBASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 AC067863.1-201ENST00000494933 530 ntBASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 TFAMP1-201ENST00000412727 736 ntBASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 DUX4L27-201ENST00000554796 1261 ntBASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 MIR4515-201ENST00000584082 81 ntBASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.73■□□□□ 0.43
NPAS3Q8IXF0 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 AC092474.2-201ENST00000424288 719 ntBASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 AC243562.1-201ENST00000560672 389 ntBASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 AL135744.1-201ENST00000565098 629 ntBASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 RARRES2P8-201ENST00000566335 367 ntBASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPAS3Q8IXF0 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms