Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 AC018712.1-201ENST00000455767 687 ntBASIC20.8■□□□□ 0.92
VPS53Q5VIR6 RNPS1P1-201ENST00000507437 918 ntBASIC20.8■□□□□ 0.92
VPS53Q5VIR6 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 AL022326.1-202ENST00000641533 845 ntBASIC20.8■□□□□ 0.92
VPS53Q5VIR6 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 AD000864.1-201ENST00000624076 2295 ntBASIC20.8■□□□□ 0.92
VPS53Q5VIR6 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 AC116353.5-201ENST00000638148 1699 ntBASIC20.8■□□□□ 0.92
VPS53Q5VIR6 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 AL121761.2-201ENST00000598007 1648 ntBASIC20.79■□□□□ 0.92
VPS53Q5VIR6 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.79■□□□□ 0.92
VPS53Q5VIR6 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 PRYP5-201ENST00000451909 266 ntBASIC20.79■□□□□ 0.92
VPS53Q5VIR6 SIGLEC30P-201ENST00000455569 941 ntBASIC20.79■□□□□ 0.92
VPS53Q5VIR6 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 SLC25A6P4-201ENST00000586535 553 ntBASIC20.79■□□□□ 0.92
VPS53Q5VIR6 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VPS53Q5VIR6 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 RPS2P1-201ENST00000434010 821 ntBASIC20.78■□□□□ 0.92
VPS53Q5VIR6 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 RNA5SP419-201ENST00000515908 135 ntBASIC20.78■□□□□ 0.92
VPS53Q5VIR6 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS53Q5VIR6 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 AC097637.2-201ENST00000624096 1997 ntBASIC20.77■□□□□ 0.92
VPS53Q5VIR6 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 SCARNA2-201ENST00000458748 420 ntBASIC20.77■□□□□ 0.92
VPS53Q5VIR6 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 AL049840.3-201ENST00000602669 611 ntBASIC20.77■□□□□ 0.92
VPS53Q5VIR6 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms