Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17■□□□□ 0.31
CXCL12P48061 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CXCL12P48061 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.99■□□□□ 0.31
CXCL12P48061 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.99■□□□□ 0.31
CXCL12P48061 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.99■□□□□ 0.31
CXCL12P48061 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CXCL12P48061 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CXCL12P48061 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CXCL12P48061 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CXCL12P48061 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 COX5BP8-201ENST00000416911 349 ntBASIC16.99■□□□□ 0.31
CXCL12P48061 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.99■□□□□ 0.31
CXCL12P48061 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.99■□□□□ 0.31
CXCL12P48061 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.99■□□□□ 0.31
CXCL12P48061 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.99■□□□□ 0.31
CXCL12P48061 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.99■□□□□ 0.31
CXCL12P48061 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.99■□□□□ 0.31
CXCL12P48061 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.99■□□□□ 0.31
CXCL12P48061 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.99■□□□□ 0.31
CXCL12P48061 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.99■□□□□ 0.31
CXCL12P48061 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
CXCL12P48061 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.99■□□□□ 0.31
CXCL12P48061 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CXCL12P48061 HTR7P1-202ENST00000624664 4411 ntBASIC16.99■□□□□ 0.31
CXCL12P48061 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.99■□□□□ 0.31
CXCL12P48061 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.98■□□□□ 0.31
CXCL12P48061 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CXCL12P48061 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CXCL12P48061 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CXCL12P48061 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CXCL12P48061 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.98■□□□□ 0.31
CXCL12P48061 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
CXCL12P48061 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CXCL12P48061 HLA-V-201ENST00000429037 534 ntBASIC16.98■□□□□ 0.31
CXCL12P48061 KRT17P7-201ENST00000451704 1104 ntBASIC16.98■□□□□ 0.31
CXCL12P48061 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CXCL12P48061 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CXCL12P48061 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CXCL12P48061 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CXCL12P48061 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.98■□□□□ 0.31
CXCL12P48061 AL031055.1-201ENST00000606362 631 ntBASIC16.98■□□□□ 0.31
CXCL12P48061 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.98■□□□□ 0.31
CXCL12P48061 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CXCL12P48061 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CXCL12P48061 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CXCL12P48061 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CXCL12P48061 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.98■□□□□ 0.31
CXCL12P48061 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CXCL12P48061 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CXCL12P48061 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
CXCL12P48061 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.98■□□□□ 0.31
CXCL12P48061 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CXCL12P48061 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.97■□□□□ 0.31
CXCL12P48061 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.97■□□□□ 0.31
CXCL12P48061 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.97■□□□□ 0.31
CXCL12P48061 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.97■□□□□ 0.31
CXCL12P48061 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 RNU1-129P-201ENST00000384064 167 ntBASIC16.97■□□□□ 0.31
CXCL12P48061 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.97■□□□□ 0.31
CXCL12P48061 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.97■□□□□ 0.31
CXCL12P48061 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.97■□□□□ 0.31
CXCL12P48061 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.97■□□□□ 0.31
CXCL12P48061 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.97■□□□□ 0.31
CXCL12P48061 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
CXCL12P48061 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.97■□□□□ 0.31
CXCL12P48061 U1.21-201ENST00000580816 167 ntBASIC16.97■□□□□ 0.31
CXCL12P48061 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.97■□□□□ 0.31
CXCL12P48061 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.97■□□□□ 0.31
CXCL12P48061 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.97■□□□□ 0.31
CXCL12P48061 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.97■□□□□ 0.31
CXCL12P48061 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms