Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4BQ9Y4P1 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.33■□□□□ 0.2
ATG4BQ9Y4P1 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4BQ9Y4P1 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4BQ9Y4P1 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.33■□□□□ 0.2
ATG4BQ9Y4P1 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4BQ9Y4P1 AC022211.2-201ENST00000585075 2527 ntBASIC16.33■□□□□ 0.2
ATG4BQ9Y4P1 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
ATG4BQ9Y4P1 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.33■□□□□ 0.2
ATG4BQ9Y4P1 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 AC060834.1-201ENST00000443027 2032 ntBASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 SCARNA2-201ENST00000458748 420 ntBASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ATG4BQ9Y4P1 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 AC020916.1-201ENST00000587762 1774 ntBASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 MTDHP4-201ENST00000600287 670 ntBASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4BQ9Y4P1 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 AC079781.3-201ENST00000449110 356 ntBASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 AC021087.4-201ENST00000563761 564 ntBASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 AL031008.1-201ENST00000619963 541 ntBASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.3■□□□□ 0.2
ATG4BQ9Y4P1 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.29■□□□□ 0.2
ATG4BQ9Y4P1 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms