Protein–RNA interactions for Protein: Q9Y2I6

NINL, Ninein-like protein, humanhuman

Predictions only

Length 1,382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NINLQ9Y2I6 HCG4-201ENST00000418983 998 ntBASIC23.4■■□□□ 1.34
NINLQ9Y2I6 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 IGHV3OR16-6-201ENST00000568775 360 ntBASIC23.4■■□□□ 1.34
NINLQ9Y2I6 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 PTMS-202ENST00000389462 773 ntTSL 2 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 CNN2P11-201ENST00000429351 262 ntBASIC23.4■■□□□ 1.34
NINLQ9Y2I6 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 MIR3909-201ENST00000579518 119 ntBASIC23.4■■□□□ 1.34
NINLQ9Y2I6 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC23.4■■□□□ 1.34
NINLQ9Y2I6 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.34
NINLQ9Y2I6 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
NINLQ9Y2I6 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC23.39■■□□□ 1.34
NINLQ9Y2I6 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 AC018470.1-201ENST00000624790 3129 ntBASIC23.39■■□□□ 1.33
NINLQ9Y2I6 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 AL355306.1-201ENST00000415580 579 ntBASIC23.39■■□□□ 1.33
NINLQ9Y2I6 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 NMU-203ENST00000507338 658 ntTSL 3 BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 AC027612.4-201ENST00000605371 583 ntBASIC23.39■■□□□ 1.33
NINLQ9Y2I6 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
NINLQ9Y2I6 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 AL121761.2-201ENST00000598007 1648 ntBASIC23.38■■□□□ 1.33
NINLQ9Y2I6 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 AC109635.5-201ENST00000533593 962 ntBASIC23.38■■□□□ 1.33
NINLQ9Y2I6 AL096865.1-201ENST00000606796 927 ntBASIC23.38■■□□□ 1.33
NINLQ9Y2I6 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 AC106028.4-201ENST00000614509 607 ntBASIC23.38■■□□□ 1.33
NINLQ9Y2I6 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
NINLQ9Y2I6 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 EML3-217ENST00000531557 2509 ntTSL 5 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 BCRP1-201ENST00000444246 691 ntBASIC23.37■■□□□ 1.33
NINLQ9Y2I6 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 AC124947.2-201ENST00000547118 1133 ntBASIC23.37■■□□□ 1.33
NINLQ9Y2I6 GREM1-201ENST00000560677 623 ntTSL 4 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC23.37■■□□□ 1.33
NINLQ9Y2I6 PCDHB18P-201ENST00000524813 2368 ntBASIC23.37■■□□□ 1.33
NINLQ9Y2I6 FRMD8P1-201ENST00000440433 1524 ntBASIC23.37■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms