Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 AC139713.2-201ENST00000641328 2723 ntBASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 LINC00982-205ENST00000420957 435 ntBASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 MKNK2P1-201ENST00000437526 628 ntBASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 AC010507.1-201ENST00000633895 436 ntBASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 REXO1L9P-201ENST00000604264 2108 ntBASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.24■□□□□ 0.35
TM9SF3Q9HD45 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 AP002414.1-201ENST00000391405 1147 ntBASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 AC002558.1-201ENST00000488906 803 ntBASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 GGTLC5P-201ENST00000617623 998 ntBASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 AC004877.2-201ENST00000623941 599 ntBASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 ELL2P1-201ENST00000413990 1906 ntBASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TM9SF3Q9HD45 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 FLJ13224-201ENST00000313737 1514 ntBASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
TM9SF3Q9HD45 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms