Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 MIR3687-2-201ENST00000577708 61 ntBASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 MIR3687-1-201ENST00000614492 61 ntBASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.79
CCDC144BQ3MJ40 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
CCDC144BQ3MJ40 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC144BQ3MJ40 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC144BQ3MJ40 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC144BQ3MJ40 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC144BQ3MJ40 CROCCP2-202ENST00000412962 2773 ntBASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 AC073621.1-201ENST00000392730 636 ntBASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 DNAJB3-201ENST00000446806 729 ntBASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 PRYP5-201ENST00000451909 266 ntBASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 MIR1199-201ENST00000621445 119 ntBASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 AC093010.1-201ENST00000473625 1624 ntBASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 SIGLEC16-201ENST00000599858 1437 ntBASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC144BQ3MJ40 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 SPDYE21P-201ENST00000413323 827 ntBASIC20■□□□□ 0.79
CCDC144BQ3MJ40 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 AC006557.2-201ENST00000592985 1240 ntBASIC20■□□□□ 0.79
CCDC144BQ3MJ40 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC144BQ3MJ40 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 AC023274.1-201ENST00000418278 595 ntBASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 RPS8P6-201ENST00000426177 609 ntBASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 AC004832.2-201ENST00000426397 482 ntBASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 AP001160.2-201ENST00000596071 487 ntBASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 AC005593.1-201ENST00000624894 515 ntBASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms