Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
SHMT2P34897 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SHMT2P34897 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SHMT2P34897 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.92■□□□□ 0.3
SHMT2P34897 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.92■□□□□ 0.3
SHMT2P34897 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.92■□□□□ 0.3
SHMT2P34897 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.92■□□□□ 0.3
SHMT2P34897 BX005266.1-201ENST00000473402 457 ntBASIC16.92■□□□□ 0.3
SHMT2P34897 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.92■□□□□ 0.3
SHMT2P34897 RNPS1P1-201ENST00000507437 918 ntBASIC16.92■□□□□ 0.3
SHMT2P34897 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.92■□□□□ 0.3
SHMT2P34897 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.92■□□□□ 0.3
SHMT2P34897 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.92■□□□□ 0.3
SHMT2P34897 AC021087.4-201ENST00000563761 564 ntBASIC16.92■□□□□ 0.3
SHMT2P34897 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.92■□□□□ 0.3
SHMT2P34897 MTDHP4-201ENST00000600287 670 ntBASIC16.92■□□□□ 0.3
SHMT2P34897 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
SHMT2P34897 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.92■□□□□ 0.3
SHMT2P34897 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.92■□□□□ 0.3
SHMT2P34897 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SHMT2P34897 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.92■□□□□ 0.3
SHMT2P34897 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.91■□□□□ 0.3
SHMT2P34897 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.91■□□□□ 0.3
SHMT2P34897 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.91■□□□□ 0.3
SHMT2P34897 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.91■□□□□ 0.3
SHMT2P34897 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SHMT2P34897 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
SHMT2P34897 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.91■□□□□ 0.3
SHMT2P34897 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SHMT2P34897 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.91■□□□□ 0.3
SHMT2P34897 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SHMT2P34897 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.91■□□□□ 0.3
SHMT2P34897 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.91■□□□□ 0.3
SHMT2P34897 AC018712.1-201ENST00000455767 687 ntBASIC16.91■□□□□ 0.3
SHMT2P34897 AC009078.2-202ENST00000463353 338 ntBASIC16.91■□□□□ 0.3
SHMT2P34897 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.91■□□□□ 0.3
SHMT2P34897 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.91■□□□□ 0.3
SHMT2P34897 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.91■□□□□ 0.3
SHMT2P34897 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.91■□□□□ 0.3
SHMT2P34897 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.91■□□□□ 0.3
SHMT2P34897 AL773604.1-201ENST00000617417 272 ntBASIC16.91■□□□□ 0.3
SHMT2P34897 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
SHMT2P34897 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
SHMT2P34897 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHMT2P34897 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.9■□□□□ 0.3
SHMT2P34897 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.9■□□□□ 0.3
SHMT2P34897 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.9■□□□□ 0.3
SHMT2P34897 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.9■□□□□ 0.3
SHMT2P34897 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.9■□□□□ 0.3
SHMT2P34897 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SHMT2P34897 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 RPS2P28-201ENST00000314255 741 ntBASIC16.9■□□□□ 0.3
SHMT2P34897 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.9■□□□□ 0.3
SHMT2P34897 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
SHMT2P34897 FDX1P1-201ENST00000449115 551 ntBASIC16.9■□□□□ 0.3
SHMT2P34897 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
SHMT2P34897 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.9■□□□□ 0.3
SHMT2P34897 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SHMT2P34897 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.9■□□□□ 0.3
SHMT2P34897 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms