Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 AL845331.1-201ENST00000424978 1190 ntBASIC13.98□□□□□ -0.17
FOXA2Q9Y261 KRT17P6-201ENST00000453795 1220 ntBASIC13.98□□□□□ -0.17
FOXA2Q9Y261 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 AC074051.2-201ENST00000565115 352 ntBASIC13.98□□□□□ -0.17
FOXA2Q9Y261 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 METTL23-204ENST00000586752 904 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
FOXA2Q9Y261 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 AC005915.1-201ENST00000624912 2018 ntBASIC13.97□□□□□ -0.17
FOXA2Q9Y261 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 AC007967.3-201ENST00000434308 558 ntBASIC13.97□□□□□ -0.17
FOXA2Q9Y261 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 NMU-205ENST00000511469 756 ntTSL 3 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 MPI-205ENST00000562606 1052 ntTSL 3 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 AC109462.3-201ENST00000573934 613 ntBASIC13.97□□□□□ -0.17
FOXA2Q9Y261 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms