Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 NARF-206ENST00000457415 1668 ntTSL 5 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 AC142381.1-201ENST00000426099 345 ntBASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 GIMAP3P-201ENST00000495150 836 ntBASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 RARRES2P9-201ENST00000565168 469 ntBASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 AC009407.1-201ENST00000568958 598 ntBASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 AC003101.2-201ENST00000612557 442 ntBASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.45■□□□□ 0.86
ZNF541Q9H0D2 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 AC079776.1-201ENST00000401540 1152 ntBASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 AP000974.1-201ENST00000623909 2387 ntBASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF541Q9H0D2 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 KRT18P55-202ENST00000578578 1546 ntBASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 MIR1909-201ENST00000411312 80 ntBASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 AC140912.1-201ENST00000577171 1054 ntBASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 AC007967.4-201ENST00000614700 386 ntBASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 AL353732.1-201ENST00000569618 1459 ntBASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF541Q9H0D2 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 AC098818.2-201ENST00000564925 2320 ntBASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 SLC22A20-204ENST00000530038 1673 ntBASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 AC007541.1-201ENST00000570282 1469 ntBASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms