Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 BMF-207ENST00000559701 630 ntTSL 3 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC13.35□□□□□ -0.27
CCDC140Q96MF4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 IRF8-202ENST00000562492 946 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 NCF1C-201ENST00000438382 1427 ntBASIC13.35□□□□□ -0.27
CCDC140Q96MF4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 GPR89P-201ENST00000407924 1495 ntBASIC13.35□□□□□ -0.27
CCDC140Q96MF4 AL121761.2-201ENST00000598007 1648 ntBASIC13.35□□□□□ -0.27
CCDC140Q96MF4 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC140Q96MF4 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 STX3-203ENST00000529177 1571 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 SCARNA2-201ENST00000458748 420 ntBASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AC124947.2-201ENST00000547118 1133 ntBASIC13.34□□□□□ -0.27
CCDC140Q96MF4 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms