Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 MYCLP1-201ENST00000372451 1075 ntBASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 KRT8P26-201ENST00000534154 1276 ntBASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 AL353801.3-201ENST00000609898 542 ntBASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 AL031133.1-201ENST00000406807 723 ntBASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 AL118508.1-201ENST00000613502 2345 ntBASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 AC092068.3-201ENST00000587894 2016 ntBASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.6■□□□□ 0.25
CLHC1Q8NHS4 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 FAM220CP-201ENST00000395253 831 ntBASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLHC1Q8NHS4 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms