Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC009407.1-201ENST00000568958 598 ntBASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 AC133552.6-201ENST00000613406 534 ntBASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SMC1BQ8NDV3 AC100803.2-201ENST00000562459 1963 ntBASIC20.33■□□□□ 0.84
SMC1BQ8NDV3 WASH6P-202ENST00000359512 1437 ntBASIC20.33■□□□□ 0.84
SMC1BQ8NDV3 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMC1BQ8NDV3 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SMC1BQ8NDV3 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.33■□□□□ 0.84
SMC1BQ8NDV3 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SMC1BQ8NDV3 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.33■□□□□ 0.84
SMC1BQ8NDV3 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 MYCLP1-201ENST00000372451 1075 ntBASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 AC119751.2-201ENST00000504529 210 ntBASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 AC107918.2-201ENST00000530817 355 ntBASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 AC018529.1-201ENST00000613063 361 ntBASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 AC005082.1-201ENST00000413042 2259 ntBASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC1BQ8NDV3 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 ELK2AP-201ENST00000392510 1007 ntBASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 AC109635.5-201ENST00000533593 962 ntBASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 BX276092.7-203ENST00000637198 1536 ntBASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC1BQ8NDV3 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 AC234783.1-201ENST00000441761 496 ntBASIC20.3■□□□□ 0.84
SMC1BQ8NDV3 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms