Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
MSH6P52701 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.38
MSH6P52701 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
MSH6P52701 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC23.64■■□□□ 1.37
MSH6P52701 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
MSH6P52701 STX6-204ENST00000542060 4809 ntTSL 2 BASIC23.64■■□□□ 1.37
MSH6P52701 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
MSH6P52701 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
MSH6P52701 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC23.64■■□□□ 1.37
MSH6P52701 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
MSH6P52701 MIR658-201ENST00000385210 100 ntBASIC23.64■■□□□ 1.37
MSH6P52701 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
MSH6P52701 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC23.64■■□□□ 1.37
MSH6P52701 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
MSH6P52701 AC092658.1-201ENST00000505836 891 ntBASIC23.64■■□□□ 1.37
MSH6P52701 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC23.64■■□□□ 1.37
MSH6P52701 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC23.64■■□□□ 1.37
MSH6P52701 RARRES2P9-201ENST00000565168 469 ntBASIC23.64■■□□□ 1.37
MSH6P52701 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC23.64■■□□□ 1.37
MSH6P52701 NKG7-205ENST00000600427 520 ntTSL 3 BASIC23.64■■□□□ 1.37
MSH6P52701 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC23.64■■□□□ 1.37
MSH6P52701 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
MSH6P52701 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
MSH6P52701 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC23.63■■□□□ 1.37
MSH6P52701 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC23.63■■□□□ 1.37
MSH6P52701 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
MSH6P52701 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC23.63■■□□□ 1.37
MSH6P52701 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.37
MSH6P52701 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC23.63■■□□□ 1.37
MSH6P52701 AC106886.1-201ENST00000568660 600 ntBASIC23.63■■□□□ 1.37
MSH6P52701 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
MSH6P52701 SNX12-206ENST00000622259 661 ntTSL 5 BASIC23.63■■□□□ 1.37
MSH6P52701 RAB34-223ENST00000636154 730 ntTSL 2 BASIC23.63■■□□□ 1.37
MSH6P52701 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH6P52701 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC23.62■■□□□ 1.37
MSH6P52701 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
MSH6P52701 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
MSH6P52701 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
MSH6P52701 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH6P52701 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH6P52701 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH6P52701 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
MSH6P52701 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH6P52701 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
MSH6P52701 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC23.62■■□□□ 1.37
MSH6P52701 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC23.62■■□□□ 1.37
MSH6P52701 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC23.62■■□□□ 1.37
MSH6P52701 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC23.62■■□□□ 1.37
MSH6P52701 AC009407.1-201ENST00000568958 598 ntBASIC23.62■■□□□ 1.37
MSH6P52701 AL031055.1-201ENST00000606362 631 ntBASIC23.62■■□□□ 1.37
MSH6P52701 AC003101.2-201ENST00000612557 442 ntBASIC23.62■■□□□ 1.37
MSH6P52701 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH6P52701 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH6P52701 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH6P52701 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH6P52701 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC23.61■■□□□ 1.37
MSH6P52701 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH6P52701 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH6P52701 HNRNPRP1-201ENST00000453465 1695 ntBASIC23.61■■□□□ 1.37
MSH6P52701 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC23.61■■□□□ 1.37
MSH6P52701 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH6P52701 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH6P52701 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC23.61■■□□□ 1.37
MSH6P52701 RNU1-129P-201ENST00000384064 167 ntBASIC23.61■■□□□ 1.37
MSH6P52701 MXI1-205ENST00000393134 889 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH6P52701 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH6P52701 DGCR5-201ENST00000399539 862 ntBASIC23.61■■□□□ 1.37
MSH6P52701 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH6P52701 AC112492.5-201ENST00000421897 457 ntBASIC23.61■■□□□ 1.37
MSH6P52701 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC23.61■■□□□ 1.37
MSH6P52701 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH6P52701 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC23.61■■□□□ 1.37
MSH6P52701 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH6P52701 MIR3909-201ENST00000579518 119 ntBASIC23.61■■□□□ 1.37
MSH6P52701 U1.21-201ENST00000580816 167 ntBASIC23.61■■□□□ 1.37
MSH6P52701 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH6P52701 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC23.61■■□□□ 1.37
MSH6P52701 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH6P52701 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH6P52701 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
MSH6P52701 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC23.61■■□□□ 1.37
MSH6P52701 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH6P52701 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH6P52701 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms