Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
BDNFP23560 PRSS29P-201ENST00000440800 595 ntBASIC18.18■□□□□ 0.5
BDNFP23560 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.18■□□□□ 0.5
BDNFP23560 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
BDNFP23560 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
BDNFP23560 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 PCDHB18P-201ENST00000524813 2368 ntBASIC18.18■□□□□ 0.5
BDNFP23560 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
BDNFP23560 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.17■□□□□ 0.5
BDNFP23560 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.17■□□□□ 0.5
BDNFP23560 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.17■□□□□ 0.5
BDNFP23560 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
BDNFP23560 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.17■□□□□ 0.5
BDNFP23560 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.17■□□□□ 0.5
BDNFP23560 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.17■□□□□ 0.5
BDNFP23560 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.17■□□□□ 0.5
BDNFP23560 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.17■□□□□ 0.5
BDNFP23560 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.17■□□□□ 0.5
BDNFP23560 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.17■□□□□ 0.5
BDNFP23560 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.17■□□□□ 0.5
BDNFP23560 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.17■□□□□ 0.5
BDNFP23560 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
BDNFP23560 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.17■□□□□ 0.5
BDNFP23560 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
BDNFP23560 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BDNFP23560 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BDNFP23560 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BDNFP23560 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
BDNFP23560 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.16■□□□□ 0.5
BDNFP23560 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
BDNFP23560 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
BDNFP23560 HCG4B-203ENST00000450128 991 ntBASIC18.16■□□□□ 0.5
BDNFP23560 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.16■□□□□ 0.5
BDNFP23560 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.16■□□□□ 0.5
BDNFP23560 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
BDNFP23560 OR7E47P-204ENST00000575924 449 ntBASIC18.16■□□□□ 0.5
BDNFP23560 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.16■□□□□ 0.5
BDNFP23560 AC010654.1-201ENST00000615722 808 ntBASIC18.16■□□□□ 0.5
BDNFP23560 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
BDNFP23560 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
BDNFP23560 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
BDNFP23560 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BDNFP23560 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BDNFP23560 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BDNFP23560 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.16■□□□□ 0.5
BDNFP23560 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BDNFP23560 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
BDNFP23560 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
BDNFP23560 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
BDNFP23560 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BDNFP23560 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
BDNFP23560 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
BDNFP23560 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
BDNFP23560 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.15■□□□□ 0.5
BDNFP23560 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.15■□□□□ 0.5
BDNFP23560 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.15■□□□□ 0.5
BDNFP23560 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
BDNFP23560 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
BDNFP23560 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
BDNFP23560 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
BDNFP23560 AC023274.1-201ENST00000418278 595 ntBASIC18.15■□□□□ 0.5
BDNFP23560 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
BDNFP23560 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.15■□□□□ 0.5
BDNFP23560 AC092865.5-201ENST00000545435 363 ntBASIC18.15■□□□□ 0.5
BDNFP23560 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.15■□□□□ 0.5
BDNFP23560 LINC00896-202ENST00000609602 2128 ntBASIC18.15■□□□□ 0.5
BDNFP23560 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BDNFP23560 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.15■□□□□ 0.5
BDNFP23560 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
BDNFP23560 AC016396.2-201ENST00000562575 1417 ntBASIC18.15■□□□□ 0.5
BDNFP23560 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.15■□□□□ 0.5
BDNFP23560 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
BDNFP23560 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
BDNFP23560 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
BDNFP23560 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
BDNFP23560 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.14■□□□□ 0.5
BDNFP23560 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
BDNFP23560 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BDNFP23560 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.14■□□□□ 0.49
BDNFP23560 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms