Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
APOEP02649 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.13■□□□□ 0.49
APOEP02649 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
APOEP02649 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
APOEP02649 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.13■□□□□ 0.49
APOEP02649 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.13■□□□□ 0.49
APOEP02649 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 AL662844.1-201ENST00000546340 181 ntBASIC18.13■□□□□ 0.49
APOEP02649 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
APOEP02649 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
APOEP02649 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 AC012313.1-201ENST00000593393 3059 ntBASIC18.13■□□□□ 0.49
APOEP02649 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
APOEP02649 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.13■□□□□ 0.49
APOEP02649 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.13■□□□□ 0.49
APOEP02649 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
APOEP02649 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.12■□□□□ 0.49
APOEP02649 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
APOEP02649 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
APOEP02649 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
APOEP02649 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
APOEP02649 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
APOEP02649 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
APOEP02649 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.12■□□□□ 0.49
APOEP02649 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.12■□□□□ 0.49
APOEP02649 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.12■□□□□ 0.49
APOEP02649 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.12■□□□□ 0.49
APOEP02649 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.12■□□□□ 0.49
APOEP02649 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.12■□□□□ 0.49
APOEP02649 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.12■□□□□ 0.49
APOEP02649 AC021087.4-201ENST00000563761 564 ntBASIC18.12■□□□□ 0.49
APOEP02649 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.12■□□□□ 0.49
APOEP02649 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.12■□□□□ 0.49
APOEP02649 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
APOEP02649 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
APOEP02649 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
APOEP02649 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
APOEP02649 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
APOEP02649 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
APOEP02649 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.12■□□□□ 0.49
APOEP02649 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.12■□□□□ 0.49
APOEP02649 AL138688.1-201ENST00000624851 1594 ntBASIC18.12■□□□□ 0.49
APOEP02649 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
APOEP02649 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.12■□□□□ 0.49
APOEP02649 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
APOEP02649 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
APOEP02649 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.11■□□□□ 0.49
APOEP02649 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.11■□□□□ 0.49
APOEP02649 AC009078.2-202ENST00000463353 338 ntBASIC18.11■□□□□ 0.49
APOEP02649 RNPS1P1-201ENST00000507437 918 ntBASIC18.11■□□□□ 0.49
APOEP02649 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.11■□□□□ 0.49
APOEP02649 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.11■□□□□ 0.49
APOEP02649 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.11■□□□□ 0.49
APOEP02649 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.11■□□□□ 0.49
APOEP02649 MTDHP4-201ENST00000600287 670 ntBASIC18.11■□□□□ 0.49
APOEP02649 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.11■□□□□ 0.49
APOEP02649 AL773604.1-201ENST00000617417 272 ntBASIC18.11■□□□□ 0.49
APOEP02649 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
APOEP02649 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
APOEP02649 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
APOEP02649 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
APOEP02649 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
APOEP02649 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
APOEP02649 AC009053.2-201ENST00000563701 2365 ntBASIC18.1■□□□□ 0.49
APOEP02649 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
APOEP02649 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.1■□□□□ 0.49
APOEP02649 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
APOEP02649 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.1■□□□□ 0.49
APOEP02649 AC046185.3-201ENST00000623228 1824 ntBASIC18.1■□□□□ 0.49
APOEP02649 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
APOEP02649 AC148477.5-201ENST00000625164 1645 ntBASIC18.1■□□□□ 0.49
APOEP02649 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
APOEP02649 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms