Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PARP8-218ENST00000513738 596 ntTSL 4 BASIC23.95■■□□□ 1.42
NPHP4O75161 FAM8A2P-201ENST00000528813 1142 ntBASIC23.95■■□□□ 1.42
NPHP4O75161 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC23.95■■□□□ 1.42
NPHP4O75161 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
NPHP4O75161 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
NPHP4O75161 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.42
NPHP4O75161 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.42
NPHP4O75161 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.42
NPHP4O75161 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC23.95■■□□□ 1.42
NPHP4O75161 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
NPHP4O75161 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP4O75161 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC23.94■■□□□ 1.42
NPHP4O75161 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC23.94■■□□□ 1.42
NPHP4O75161 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC23.94■■□□□ 1.42
NPHP4O75161 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
NPHP4O75161 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC23.94■■□□□ 1.42
NPHP4O75161 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC23.94■■□□□ 1.42
NPHP4O75161 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC23.94■■□□□ 1.42
NPHP4O75161 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC23.94■■□□□ 1.42
NPHP4O75161 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC23.94■■□□□ 1.42
NPHP4O75161 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC23.94■■□□□ 1.42
NPHP4O75161 AL589739.1-201ENST00000607720 493 ntBASIC23.94■■□□□ 1.42
NPHP4O75161 COX11-210ENST00000639671 696 ntBASIC23.94■■□□□ 1.42
NPHP4O75161 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP4O75161 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP4O75161 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
NPHP4O75161 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC23.94■■□□□ 1.42
NPHP4O75161 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC23.94■■□□□ 1.42
NPHP4O75161 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC23.94■■□□□ 1.42
NPHP4O75161 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP4O75161 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP4O75161 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP4O75161 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC23.94■■□□□ 1.42
NPHP4O75161 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP4O75161 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP4O75161 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC23.93■■□□□ 1.42
NPHP4O75161 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
NPHP4O75161 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP4O75161 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
NPHP4O75161 AC004945.1-201ENST00000416738 983 ntBASIC23.93■■□□□ 1.42
NPHP4O75161 AL353705.2-201ENST00000428243 662 ntBASIC23.93■■□□□ 1.42
NPHP4O75161 RASL12-203ENST00000434605 982 ntTSL 2 BASIC23.93■■□□□ 1.42
NPHP4O75161 KRT223P-202ENST00000449164 1292 ntBASIC23.93■■□□□ 1.42
NPHP4O75161 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC23.93■■□□□ 1.42
NPHP4O75161 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC23.93■■□□□ 1.42
NPHP4O75161 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
NPHP4O75161 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC23.93■■□□□ 1.42
NPHP4O75161 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC23.93■■□□□ 1.42
NPHP4O75161 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP4O75161 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC23.93■■□□□ 1.42
NPHP4O75161 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC23.93■■□□□ 1.42
NPHP4O75161 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
NPHP4O75161 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP4O75161 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP4O75161 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP4O75161 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP4O75161 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC23.93■■□□□ 1.42
NPHP4O75161 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP4O75161 AL023806.1-201ENST00000603994 1649 ntBASIC23.93■■□□□ 1.42
NPHP4O75161 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC23.93■■□□□ 1.42
NPHP4O75161 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC23.93■■□□□ 1.42
NPHP4O75161 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC23.93■■□□□ 1.42
NPHP4O75161 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
NPHP4O75161 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
NPHP4O75161 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
NPHP4O75161 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP4O75161 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC23.93■■□□□ 1.42
NPHP4O75161 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
NPHP4O75161 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC23.93■■□□□ 1.42
NPHP4O75161 SPDYE18-201ENST00000510091 1050 ntBASIC23.93■■□□□ 1.42
NPHP4O75161 LITAF-210ENST00000571976 548 ntTSL 2 BASIC23.93■■□□□ 1.42
NPHP4O75161 LITAF-214ENST00000574703 486 ntTSL 2 BASIC23.93■■□□□ 1.42
NPHP4O75161 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC23.93■■□□□ 1.42
NPHP4O75161 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC23.93■■□□□ 1.42
NPHP4O75161 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC23.92■■□□□ 1.42
NPHP4O75161 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
NPHP4O75161 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
NPHP4O75161 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC23.92■■□□□ 1.42
NPHP4O75161 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
NPHP4O75161 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC23.92■■□□□ 1.42
NPHP4O75161 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 SPDYE19P-201ENST00000338590 713 ntBASIC23.92■■□□□ 1.42
NPHP4O75161 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 RPF1-202ENST00000370656 724 ntTSL 2 BASIC23.92■■□□□ 1.42
NPHP4O75161 RPL28-204ENST00000431533 590 ntTSL 2 BASIC23.92■■□□□ 1.42
NPHP4O75161 MTND6P24-201ENST00000440466 518 ntBASIC23.92■■□□□ 1.42
NPHP4O75161 RPL28-206ENST00000558752 671 ntTSL 3 BASIC23.92■■□□□ 1.42
NPHP4O75161 ORC6-206ENST00000568364 888 ntTSL 5 BASIC23.92■■□□□ 1.42
NPHP4O75161 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP4O75161 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms