Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
NPHP1O15259 AL035633.1-201ENST00000406139 838 ntBASIC21.72■■□□□ 1.07
NPHP1O15259 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC21.72■■□□□ 1.07
NPHP1O15259 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC21.72■■□□□ 1.07
NPHP1O15259 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC21.72■■□□□ 1.07
NPHP1O15259 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP1O15259 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC21.72■■□□□ 1.07
NPHP1O15259 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC21.72■■□□□ 1.07
NPHP1O15259 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP1O15259 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP1O15259 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP1O15259 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP1O15259 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP1O15259 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
NPHP1O15259 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP1O15259 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP1O15259 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
NPHP1O15259 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP1O15259 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP1O15259 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP1O15259 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.71■■□□□ 1.07
NPHP1O15259 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP1O15259 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
NPHP1O15259 WIZP1-201ENST00000531444 2299 ntBASIC21.71■■□□□ 1.07
NPHP1O15259 AC006116.8-202ENST00000587620 1550 ntBASIC21.71■■□□□ 1.07
NPHP1O15259 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP1O15259 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP1O15259 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
NPHP1O15259 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC21.71■■□□□ 1.07
NPHP1O15259 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC21.71■■□□□ 1.07
NPHP1O15259 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC21.71■■□□□ 1.07
NPHP1O15259 ACTG1P4-201ENST00000425123 1122 ntBASIC21.71■■□□□ 1.07
NPHP1O15259 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP1O15259 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC21.71■■□□□ 1.07
NPHP1O15259 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
NPHP1O15259 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC21.71■■□□□ 1.07
NPHP1O15259 AC023141.5-201ENST00000458585 616 ntBASIC21.71■■□□□ 1.07
NPHP1O15259 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP1O15259 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC21.71■■□□□ 1.07
NPHP1O15259 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
NPHP1O15259 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP1O15259 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP1O15259 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.71■■□□□ 1.07
NPHP1O15259 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP1O15259 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
NPHP1O15259 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
NPHP1O15259 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
NPHP1O15259 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.07
NPHP1O15259 AC093503.3-201ENST00000624917 2352 ntBASIC21.7■■□□□ 1.07
NPHP1O15259 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
NPHP1O15259 AC092919.2-201ENST00000623631 1645 ntBASIC21.7■■□□□ 1.06
NPHP1O15259 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.7■■□□□ 1.06
NPHP1O15259 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP1O15259 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
NPHP1O15259 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP1O15259 PTMS-202ENST00000389462 773 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP1O15259 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.7■■□□□ 1.06
NPHP1O15259 BCRP1-201ENST00000444246 691 ntBASIC21.7■■□□□ 1.06
NPHP1O15259 TIMM8BP1-201ENST00000452384 211 ntBASIC21.7■■□□□ 1.06
NPHP1O15259 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP1O15259 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP1O15259 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC21.7■■□□□ 1.06
NPHP1O15259 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC21.7■■□□□ 1.06
NPHP1O15259 AC022145.2-201ENST00000598203 171 ntBASIC21.7■■□□□ 1.06
NPHP1O15259 AL096865.1-201ENST00000606796 927 ntBASIC21.7■■□□□ 1.06
NPHP1O15259 LINC00628-201ENST00000628516 1289 ntBASIC21.7■■□□□ 1.06
NPHP1O15259 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP1O15259 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
NPHP1O15259 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP1O15259 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.7■■□□□ 1.06
NPHP1O15259 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP1O15259 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP1O15259 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP1O15259 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP1O15259 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP1O15259 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
NPHP1O15259 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC21.69■■□□□ 1.06
NPHP1O15259 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP1O15259 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
NPHP1O15259 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC21.69■■□□□ 1.06
NPHP1O15259 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.69■■□□□ 1.06
NPHP1O15259 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP1O15259 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC21.69■■□□□ 1.06
NPHP1O15259 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP1O15259 HNRNPFP1-201ENST00000391730 1133 ntBASIC21.69■■□□□ 1.06
NPHP1O15259 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
NPHP1O15259 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP1O15259 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC21.69■■□□□ 1.06
NPHP1O15259 NMU-203ENST00000507338 658 ntTSL 3 BASIC21.69■■□□□ 1.06
NPHP1O15259 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP1O15259 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP1O15259 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC21.69■■□□□ 1.06
NPHP1O15259 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC21.69■■□□□ 1.06
NPHP1O15259 AL590787.1-201ENST00000568856 1315 ntBASIC21.69■■□□□ 1.06
NPHP1O15259 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP1O15259 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP1O15259 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
NPHP1O15259 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
NPHP1O15259 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP1O15259 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms