Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 APOC3-202ENST00000375345 604 ntTSL 5 BASIC12.31□□□□□ -0.44
PRKDCP78527 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC12.31□□□□□ -0.44
PRKDCP78527 AGER-214ENST00000538695 487 ntTSL 2 BASIC12.31□□□□□ -0.44
PRKDCP78527 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC12.31□□□□□ -0.44
PRKDCP78527 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC12.31□□□□□ -0.44
PRKDCP78527 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC12.31□□□□□ -0.44
PRKDCP78527 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
PRKDCP78527 AL135999.2-201ENST00000622438 1686 ntBASIC12.31□□□□□ -0.44
PRKDCP78527 ANO7L1-203ENST00000602586 1720 ntBASIC12.31□□□□□ -0.44
PRKDCP78527 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC12.31□□□□□ -0.44
PRKDCP78527 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC12.31□□□□□ -0.44
PRKDCP78527 MIR3909-201ENST00000579518 119 ntBASIC12.31□□□□□ -0.44
PRKDCP78527 MIR4515-201ENST00000584082 81 ntBASIC12.31□□□□□ -0.44
PRKDCP78527 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC12.31□□□□□ -0.44
PRKDCP78527 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
PRKDCP78527 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC12.31□□□□□ -0.44
PRKDCP78527 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC12.3□□□□□ -0.44
PRKDCP78527 MIR3615-201ENST00000581999 87 ntBASIC12.3□□□□□ -0.44
PRKDCP78527 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC12.3□□□□□ -0.44
PRKDCP78527 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
PRKDCP78527 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 AC126763.1-201ENST00000552015 2118 ntBASIC12.3□□□□□ -0.44
PRKDCP78527 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC12.3□□□□□ -0.44
PRKDCP78527 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC12.3□□□□□ -0.44
PRKDCP78527 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC12.3□□□□□ -0.44
PRKDCP78527 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 USP39-202ENST00000409025 1946 ntTSL 5 BASIC12.3□□□□□ -0.44
PRKDCP78527 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC12.3□□□□□ -0.44
PRKDCP78527 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC12.3□□□□□ -0.44
PRKDCP78527 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
PRKDCP78527 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 LDHBP1-201ENST00000455730 1119 ntBASIC12.3□□□□□ -0.44
PRKDCP78527 FTH1-202ENST00000526640 786 ntTSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
PRKDCP78527 MIR4706-201ENST00000582134 82 ntBASIC12.3□□□□□ -0.44
PRKDCP78527 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
PRKDCP78527 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PRKDCP78527 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
PRKDCP78527 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC12.29□□□□□ -0.44
PRKDCP78527 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
PRKDCP78527 CSF2RBP1-201ENST00000447905 391 ntBASIC12.29□□□□□ -0.44
PRKDCP78527 AC055876.2-201ENST00000531834 546 ntBASIC12.29□□□□□ -0.44
PRKDCP78527 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
PRKDCP78527 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC12.29□□□□□ -0.44
PRKDCP78527 AC073389.1-201ENST00000595595 795 ntBASIC12.29□□□□□ -0.44
PRKDCP78527 AL031055.1-201ENST00000606362 631 ntBASIC12.29□□□□□ -0.44
PRKDCP78527 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
PRKDCP78527 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
PRKDCP78527 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
PRKDCP78527 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC12.29□□□□□ -0.44
PRKDCP78527 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PRKDCP78527 CENPM-206ENST00000407253 818 ntTSL 2 BASIC12.29□□□□□ -0.44
PRKDCP78527 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
PRKDCP78527 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PRKDCP78527 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC12.29□□□□□ -0.44
PRKDCP78527 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC12.29□□□□□ -0.44
PRKDCP78527 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
PRKDCP78527 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PRKDCP78527 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.29□□□□□ -0.44
PRKDCP78527 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
PRKDCP78527 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PRKDCP78527 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC12.29□□□□□ -0.44
PRKDCP78527 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC12.29□□□□□ -0.44
PRKDCP78527 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC12.29□□□□□ -0.44
PRKDCP78527 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC12.29□□□□□ -0.44
PRKDCP78527 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC12.29□□□□□ -0.44
PRKDCP78527 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms