Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
RNF4P78317 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.01■□□□□ 0.15
RNF4P78317 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF4P78317 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 ELK2BP-201ENST00000415014 1224 ntBASIC16.01■□□□□ 0.15
RNF4P78317 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 IGHV3-22-201ENST00000520721 359 ntBASIC16.01■□□□□ 0.15
RNF4P78317 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.01■□□□□ 0.15
RNF4P78317 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF4P78317 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF4P78317 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
RNF4P78317 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.01■□□□□ 0.15
RNF4P78317 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
RNF4P78317 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF4P78317 AC005593.1-201ENST00000624894 515 ntBASIC16.01■□□□□ 0.15
RNF4P78317 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF4P78317 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.01■□□□□ 0.15
RNF4P78317 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.01■□□□□ 0.15
RNF4P78317 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
RNF4P78317 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
RNF4P78317 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16■□□□□ 0.15
RNF4P78317 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
RNF4P78317 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16■□□□□ 0.15
RNF4P78317 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
RNF4P78317 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16■□□□□ 0.15
RNF4P78317 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16■□□□□ 0.15
RNF4P78317 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16■□□□□ 0.15
RNF4P78317 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
RNF4P78317 AC117500.6-201ENST00000624871 588 ntBASIC16■□□□□ 0.15
RNF4P78317 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
RNF4P78317 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
RNF4P78317 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
RNF4P78317 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16■□□□□ 0.15
RNF4P78317 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
RNF4P78317 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
RNF4P78317 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
RNF4P78317 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
RNF4P78317 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
RNF4P78317 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
RNF4P78317 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
RNF4P78317 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.99■□□□□ 0.15
RNF4P78317 AL022342.1-201ENST00000400363 863 ntBASIC15.99■□□□□ 0.15
RNF4P78317 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.99■□□□□ 0.15
RNF4P78317 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms