Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.32■□□□□ 0.2
CLK1P49759 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.32■□□□□ 0.2
CLK1P49759 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLK1P49759 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.32■□□□□ 0.2
CLK1P49759 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLK1P49759 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
CLK1P49759 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLK1P49759 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLK1P49759 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.32■□□□□ 0.2
CLK1P49759 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
CLK1P49759 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CLK1P49759 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.31■□□□□ 0.2
CLK1P49759 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.31■□□□□ 0.2
CLK1P49759 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.31■□□□□ 0.2
CLK1P49759 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CLK1P49759 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 CROCCP2-202ENST00000412962 2773 ntBASIC16.31■□□□□ 0.2
CLK1P49759 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.31■□□□□ 0.2
CLK1P49759 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.31■□□□□ 0.2
CLK1P49759 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.31■□□□□ 0.2
CLK1P49759 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.31■□□□□ 0.2
CLK1P49759 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.31■□□□□ 0.2
CLK1P49759 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.31■□□□□ 0.2
CLK1P49759 GPR32P1-201ENST00000601788 811 ntBASIC16.31■□□□□ 0.2
CLK1P49759 AC099343.3-201ENST00000605834 2503 ntBASIC16.31■□□□□ 0.2
CLK1P49759 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CLK1P49759 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CLK1P49759 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
CLK1P49759 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLK1P49759 DOC2GP-204ENST00000639052 2548 ntBASIC16.3■□□□□ 0.2
CLK1P49759 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.3■□□□□ 0.2
CLK1P49759 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CLK1P49759 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 KRT18P55-202ENST00000578578 1546 ntBASIC16.3■□□□□ 0.2
CLK1P49759 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
CLK1P49759 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.3■□□□□ 0.2
CLK1P49759 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.3■□□□□ 0.2
CLK1P49759 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.3■□□□□ 0.2
CLK1P49759 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.3■□□□□ 0.2
CLK1P49759 AL031133.1-201ENST00000406807 723 ntBASIC16.3■□□□□ 0.2
CLK1P49759 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 KRT18P65-201ENST00000439811 1286 ntBASIC16.3■□□□□ 0.2
CLK1P49759 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CLK1P49759 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.3■□□□□ 0.2
CLK1P49759 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CLK1P49759 NTF6B-201ENST00000591913 560 ntBASIC16.3■□□□□ 0.2
CLK1P49759 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.3■□□□□ 0.2
CLK1P49759 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CLK1P49759 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.3■□□□□ 0.2
CLK1P49759 PCDHA14-201ENST00000506751 2298 ntBASIC16.3■□□□□ 0.2
CLK1P49759 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CLK1P49759 AL355312.1-201ENST00000407115 2176 ntBASIC16.3■□□□□ 0.2
CLK1P49759 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.3■□□□□ 0.2
CLK1P49759 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CLK1P49759 AL138688.1-201ENST00000624851 1594 ntBASIC16.3■□□□□ 0.2
CLK1P49759 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 AC008741.2-201ENST00000612792 3115 ntBASIC16.3■□□□□ 0.2
CLK1P49759 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLK1P49759 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLK1P49759 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLK1P49759 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CLK1P49759 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLK1P49759 LINC00167-201ENST00000530583 1419 ntBASIC16.29■□□□□ 0.2
CLK1P49759 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLK1P49759 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLK1P49759 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLK1P49759 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CLK1P49759 AC105020.1-201ENST00000435356 2205 ntBASIC16.29■□□□□ 0.2
CLK1P49759 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLK1P49759 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.29■□□□□ 0.2
CLK1P49759 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.29■□□□□ 0.2
CLK1P49759 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CLK1P49759 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.29■□□□□ 0.2
CLK1P49759 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms