Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 AC005915.1-201ENST00000624912 2018 ntBASIC17.91■□□□□ 0.46
PCDH9Q9HC56 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 AC009533.2-201ENST00000543664 586 ntBASIC17.9■□□□□ 0.46
PCDH9Q9HC56 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
PCDH9Q9HC56 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.89■□□□□ 0.46
PCDH9Q9HC56 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PCDH9Q9HC56 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
PCDH9Q9HC56 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.46
PCDH9Q9HC56 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 AC122714.2-201ENST00000502787 707 ntBASIC17.89■□□□□ 0.45
PCDH9Q9HC56 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 AC092053.1-201ENST00000605787 1936 ntBASIC17.89■□□□□ 0.45
PCDH9Q9HC56 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDH9Q9HC56 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms