Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 TPSP2-201ENST00000561760 610 ntBASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 STK25P1-201ENST00000585406 838 ntBASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 AC105020.1-201ENST00000435356 2205 ntBASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UPF3BQ9BZI7 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 FLJ38576-201ENST00000623820 2459 ntBASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 AP002414.4-201ENST00000589764 1148 ntBASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 AC079328.2-201ENST00000561241 3354 ntBASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 AL353593.2-201ENST00000602529 1483 ntBASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 AC132938.5-201ENST00000624980 1813 ntBASIC20.67■□□□□ 0.9
UPF3BQ9BZI7 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 AC092068.3-201ENST00000587894 2016 ntBASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 CES3-203ENST00000543856 3178 ntTSL 2 BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 AC103564.2-201ENST00000432853 1299 ntBASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 TOB2P1-201ENST00000469761 992 ntBASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 AC011467.2-201ENST00000598425 242 ntBASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 AC093458.2-201ENST00000623150 629 ntBASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 IER3-202ENST00000376377 1350 ntBASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 TP73-AS1-210ENST00000637775 1455 ntBASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UPF3BQ9BZI7 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
UPF3BQ9BZI7 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC20.65■□□□□ 0.9
UPF3BQ9BZI7 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
UPF3BQ9BZI7 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.65■□□□□ 0.9
UPF3BQ9BZI7 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
UPF3BQ9BZI7 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms