Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC28.25■■■□□ 2.11
IFT140Q96RY7 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
IFT140Q96RY7 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
IFT140Q96RY7 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC28.25■■■□□ 2.11
IFT140Q96RY7 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC28.25■■■□□ 2.11
IFT140Q96RY7 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
IFT140Q96RY7 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
IFT140Q96RY7 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
IFT140Q96RY7 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
IFT140Q96RY7 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC28.24■■■□□ 2.11
IFT140Q96RY7 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
IFT140Q96RY7 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC28.24■■■□□ 2.11
IFT140Q96RY7 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC28.24■■■□□ 2.11
IFT140Q96RY7 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC28.24■■■□□ 2.11
IFT140Q96RY7 MPV17-208ENST00000405076 603 ntTSL 5 BASIC28.24■■■□□ 2.11
IFT140Q96RY7 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
IFT140Q96RY7 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
IFT140Q96RY7 AC004945.1-201ENST00000416738 983 ntBASIC28.24■■■□□ 2.11
IFT140Q96RY7 RASL12-203ENST00000434605 982 ntTSL 2 BASIC28.24■■■□□ 2.11
IFT140Q96RY7 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
IFT140Q96RY7 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
IFT140Q96RY7 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC28.24■■■□□ 2.11
IFT140Q96RY7 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC28.24■■■□□ 2.11
IFT140Q96RY7 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
IFT140Q96RY7 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
IFT140Q96RY7 REXO1L6P-201ENST00000603433 1515 ntBASIC28.24■■■□□ 2.11
IFT140Q96RY7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC28.23■■■□□ 2.11
IFT140Q96RY7 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
IFT140Q96RY7 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC28.23■■■□□ 2.11
IFT140Q96RY7 PP14571-201ENST00000404327 934 ntTSL 2 BASIC28.23■■■□□ 2.11
IFT140Q96RY7 AL353705.2-201ENST00000428243 662 ntBASIC28.23■■■□□ 2.11
IFT140Q96RY7 LITAF-210ENST00000571976 548 ntTSL 2 BASIC28.23■■■□□ 2.11
IFT140Q96RY7 LITAF-214ENST00000574703 486 ntTSL 2 BASIC28.23■■■□□ 2.11
IFT140Q96RY7 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC28.23■■■□□ 2.11
IFT140Q96RY7 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC28.23■■■□□ 2.11
IFT140Q96RY7 LINC00895-201ENST00000629028 1637 ntBASIC28.23■■■□□ 2.11
IFT140Q96RY7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
IFT140Q96RY7 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC28.23■■■□□ 2.11
IFT140Q96RY7 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC28.23■■■□□ 2.11
IFT140Q96RY7 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
IFT140Q96RY7 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
IFT140Q96RY7 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC28.22■■■□□ 2.11
IFT140Q96RY7 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
IFT140Q96RY7 ORC6-206ENST00000568364 888 ntTSL 5 BASIC28.22■■■□□ 2.11
IFT140Q96RY7 COX11-210ENST00000639671 696 ntBASIC28.22■■■□□ 2.11
IFT140Q96RY7 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
IFT140Q96RY7 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC28.22■■■□□ 2.11
IFT140Q96RY7 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
IFT140Q96RY7 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
IFT140Q96RY7 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
IFT140Q96RY7 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
IFT140Q96RY7 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
IFT140Q96RY7 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
IFT140Q96RY7 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 SLC7A15P-201ENST00000424028 1363 ntBASIC28.21■■■□□ 2.11
IFT140Q96RY7 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 KRT223P-202ENST00000449164 1292 ntBASIC28.21■■■□□ 2.11
IFT140Q96RY7 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
IFT140Q96RY7 SPDYE18-201ENST00000510091 1050 ntBASIC28.21■■■□□ 2.11
IFT140Q96RY7 FUZ-207ENST00000526575 482 ntTSL 4 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 AL023806.1-201ENST00000603994 1649 ntBASIC28.21■■■□□ 2.11
IFT140Q96RY7 WT1-AS_2.1-201ENST00000613208 137 ntBASIC28.21■■■□□ 2.11
IFT140Q96RY7 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
IFT140Q96RY7 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC28.21■■■□□ 2.11
IFT140Q96RY7 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 KRT18P55-202ENST00000578578 1546 ntBASIC28.21■■■□□ 2.11
IFT140Q96RY7 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
IFT140Q96RY7 FAM220BP-201ENST00000377689 816 ntBASIC28.21■■■□□ 2.11
IFT140Q96RY7 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC28.21■■■□□ 2.11
IFT140Q96RY7 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
IFT140Q96RY7 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC28.2■■■□□ 2.11
IFT140Q96RY7 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC28.2■■■□□ 2.11
IFT140Q96RY7 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
IFT140Q96RY7 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC28.2■■■□□ 2.11
IFT140Q96RY7 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC28.2■■■□□ 2.11
IFT140Q96RY7 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
IFT140Q96RY7 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
IFT140Q96RY7 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
IFT140Q96RY7 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
IFT140Q96RY7 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
IFT140Q96RY7 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
IFT140Q96RY7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
IFT140Q96RY7 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC28.2■■■□□ 2.1
IFT140Q96RY7 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
IFT140Q96RY7 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC28.2■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms