Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 AC141586.5-201ENST00000624546 2050 ntBASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 RPS2P1-201ENST00000434010 821 ntBASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 AC120114.3-201ENST00000611923 658 ntBASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
CHMP4CQ96CF2 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 AC106795.1-205ENST00000512851 1056 ntBASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 RNA5SP419-201ENST00000515908 135 ntBASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 AC021087.4-201ENST00000563761 564 ntBASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 NKAPP1-205ENST00000585790 367 ntBASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CHMP4CQ96CF2 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP4CQ96CF2 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP4CQ96CF2 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP4CQ96CF2 AC139713.2-201ENST00000641328 2723 ntBASIC20.64■□□□□ 0.9
CHMP4CQ96CF2 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CHMP4CQ96CF2 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.64■□□□□ 0.9
CHMP4CQ96CF2 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.64■□□□□ 0.9
CHMP4CQ96CF2 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 AL022342.1-201ENST00000400363 863 ntBASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 AL031284.1-201ENST00000419297 478 ntBASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 AL590627.1-203ENST00000421194 1026 ntBASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 AP001005.1-201ENST00000571755 1248 ntBASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms