Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.33■□□□□ 0.37
TTC28Q96AY4 AL353705.2-201ENST00000428243 662 ntBASIC17.33■□□□□ 0.37
TTC28Q96AY4 KRT43P-201ENST00000434019 910 ntBASIC17.33■□□□□ 0.37
TTC28Q96AY4 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.33■□□□□ 0.37
TTC28Q96AY4 AC006033.1-201ENST00000440505 426 ntBASIC17.33■□□□□ 0.37
TTC28Q96AY4 CSF2RBP1-201ENST00000447905 391 ntBASIC17.33■□□□□ 0.37
TTC28Q96AY4 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
TTC28Q96AY4 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TTC28Q96AY4 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TTC28Q96AY4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.33■□□□□ 0.37
TTC28Q96AY4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TTC28Q96AY4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TTC28Q96AY4 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TTC28Q96AY4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.33■□□□□ 0.37
TTC28Q96AY4 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TTC28Q96AY4 KRT8P19-201ENST00000551916 1455 ntBASIC17.33■□□□□ 0.36
TTC28Q96AY4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.33■□□□□ 0.36
TTC28Q96AY4 AC007952.6-201ENST00000573168 2673 ntBASIC17.33■□□□□ 0.36
TTC28Q96AY4 AC003957.1-201ENST00000625108 2673 ntBASIC17.33■□□□□ 0.36
TTC28Q96AY4 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
TTC28Q96AY4 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TTC28Q96AY4 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TTC28Q96AY4 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.33■□□□□ 0.36
TTC28Q96AY4 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.33■□□□□ 0.36
TTC28Q96AY4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TTC28Q96AY4 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.33■□□□□ 0.36
TTC28Q96AY4 AC010319.3-201ENST00000597028 470 ntBASIC17.33■□□□□ 0.36
TTC28Q96AY4 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.33■□□□□ 0.36
TTC28Q96AY4 WFDC1-204ENST00000613603 549 ntBASIC17.33■□□□□ 0.36
TTC28Q96AY4 AL033527.5-201ENST00000641382 801 ntBASIC17.33■□□□□ 0.36
TTC28Q96AY4 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.33■□□□□ 0.36
TTC28Q96AY4 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TTC28Q96AY4 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TTC28Q96AY4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 RARRES2P9-201ENST00000565168 469 ntBASIC17.32■□□□□ 0.36
TTC28Q96AY4 AL365330.1-201ENST00000607459 531 ntBASIC17.32■□□□□ 0.36
TTC28Q96AY4 AL589739.1-201ENST00000607720 493 ntBASIC17.32■□□□□ 0.36
TTC28Q96AY4 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.32■□□□□ 0.36
TTC28Q96AY4 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 AC120498.9-201ENST00000339021 3867 ntBASIC17.32■□□□□ 0.36
TTC28Q96AY4 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC17.32■□□□□ 0.36
TTC28Q96AY4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TTC28Q96AY4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TTC28Q96AY4 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TTC28Q96AY4 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TTC28Q96AY4 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 GABARAPL3-202ENST00000624044 1851 ntBASIC17.31■□□□□ 0.36
TTC28Q96AY4 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TTC28Q96AY4 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 CASP16P-204ENST00000635032 809 ntBASIC17.31■□□□□ 0.36
TTC28Q96AY4 AC016027.1-202ENST00000607927 1699 ntBASIC17.31■□□□□ 0.36
TTC28Q96AY4 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TTC28Q96AY4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.31■□□□□ 0.36
TTC28Q96AY4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TTC28Q96AY4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 SLC25A24P2-201ENST00000415059 510 ntBASIC17.3■□□□□ 0.36
TTC28Q96AY4 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms