Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SRP54P61011 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SRP54P61011 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SRP54P61011 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.1■□□□□ 0.33
SRP54P61011 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.1■□□□□ 0.33
SRP54P61011 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.1■□□□□ 0.33
SRP54P61011 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.1■□□□□ 0.33
SRP54P61011 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.1■□□□□ 0.33
SRP54P61011 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.1■□□□□ 0.33
SRP54P61011 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
SRP54P61011 AC139530.3-201ENST00000620344 690 ntBASIC17.1■□□□□ 0.33
SRP54P61011 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.1■□□□□ 0.33
SRP54P61011 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
SRP54P61011 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SRP54P61011 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SRP54P61011 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SRP54P61011 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.1■□□□□ 0.33
SRP54P61011 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.1■□□□□ 0.33
SRP54P61011 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.1■□□□□ 0.33
SRP54P61011 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.1■□□□□ 0.33
SRP54P61011 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.1■□□□□ 0.33
SRP54P61011 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SRP54P61011 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.09■□□□□ 0.33
SRP54P61011 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.09■□□□□ 0.33
SRP54P61011 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
SRP54P61011 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
SRP54P61011 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SRP54P61011 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.09■□□□□ 0.33
SRP54P61011 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.09■□□□□ 0.33
SRP54P61011 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.09■□□□□ 0.33
SRP54P61011 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.09■□□□□ 0.33
SRP54P61011 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.09■□□□□ 0.33
SRP54P61011 IGHV3-65-201ENST00000523210 341 ntBASIC17.09■□□□□ 0.33
SRP54P61011 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.09■□□□□ 0.33
SRP54P61011 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.09■□□□□ 0.33
SRP54P61011 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.09■□□□□ 0.33
SRP54P61011 AC040169.1-201ENST00000565382 521 ntBASIC17.09■□□□□ 0.33
SRP54P61011 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SRP54P61011 AL353135.1-201ENST00000606729 504 ntBASIC17.09■□□□□ 0.33
SRP54P61011 AC008667.4-201ENST00000607370 168 ntBASIC17.09■□□□□ 0.33
SRP54P61011 AC064836.3-201ENST00000607928 673 ntBASIC17.09■□□□□ 0.33
SRP54P61011 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.09■□□□□ 0.33
SRP54P61011 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 LINC01451-201ENST00000623792 534 ntBASIC17.09■□□□□ 0.33
SRP54P61011 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.09■□□□□ 0.33
SRP54P61011 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.09■□□□□ 0.33
SRP54P61011 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.09■□□□□ 0.33
SRP54P61011 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.09■□□□□ 0.33
SRP54P61011 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.09■□□□□ 0.33
SRP54P61011 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SRP54P61011 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SRP54P61011 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SRP54P61011 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SRP54P61011 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.08■□□□□ 0.33
SRP54P61011 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SRP54P61011 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SRP54P61011 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SRP54P61011 GPR89P-201ENST00000407924 1495 ntBASIC17.08■□□□□ 0.32
SRP54P61011 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.08■□□□□ 0.32
SRP54P61011 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SRP54P61011 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SRP54P61011 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.08■□□□□ 0.32
SRP54P61011 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
SRP54P61011 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SRP54P61011 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SRP54P61011 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SRP54P61011 AC108073.2-201ENST00000464002 357 ntBASIC17.08■□□□□ 0.32
SRP54P61011 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SRP54P61011 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SRP54P61011 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.08■□□□□ 0.32
SRP54P61011 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.08■□□□□ 0.32
SRP54P61011 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.08■□□□□ 0.32
SRP54P61011 MIR4751-201ENST00000578027 74 ntBASIC17.08■□□□□ 0.32
SRP54P61011 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.08■□□□□ 0.32
SRP54P61011 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.08■□□□□ 0.32
SRP54P61011 AL805961.1-202ENST00000641562 540 ntBASIC17.08■□□□□ 0.32
SRP54P61011 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
SRP54P61011 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
SRP54P61011 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SRP54P61011 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SRP54P61011 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SRP54P61011 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms