Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
RFX3P48380 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
RFX3P48380 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
RFX3P48380 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 NSUN5P1-202ENST00000421140 1535 ntBASIC16.32■□□□□ 0.2
RFX3P48380 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX3P48380 HCG4P8-203ENST00000443049 980 ntBASIC16.32■□□□□ 0.2
RFX3P48380 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
RFX3P48380 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.32■□□□□ 0.2
RFX3P48380 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 NSUN5P2-203ENST00000457352 1529 ntBASIC16.32■□□□□ 0.2
RFX3P48380 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX3P48380 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.32■□□□□ 0.2
RFX3P48380 AC124067.4-201ENST00000519691 2379 ntBASIC16.32■□□□□ 0.2
RFX3P48380 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX3P48380 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX3P48380 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.32■□□□□ 0.2
RFX3P48380 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.32■□□□□ 0.2
RFX3P48380 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX3P48380 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.32■□□□□ 0.2
RFX3P48380 MIR3180-1-201ENST00000580374 94 ntBASIC16.32■□□□□ 0.2
RFX3P48380 MIR3180-3-201ENST00000584616 94 ntBASIC16.32■□□□□ 0.2
RFX3P48380 AC099336.1-202ENST00000602961 463 ntBASIC16.32■□□□□ 0.2
RFX3P48380 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.32■□□□□ 0.2
RFX3P48380 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.31■□□□□ 0.2
RFX3P48380 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
RFX3P48380 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
RFX3P48380 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.31■□□□□ 0.2
RFX3P48380 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.31■□□□□ 0.2
RFX3P48380 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.31■□□□□ 0.2
RFX3P48380 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.31■□□□□ 0.2
RFX3P48380 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.31■□□□□ 0.2
RFX3P48380 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.31■□□□□ 0.2
RFX3P48380 AC138894.3-201ENST00000603787 634 ntBASIC16.31■□□□□ 0.2
RFX3P48380 AL353801.3-201ENST00000609898 542 ntBASIC16.31■□□□□ 0.2
RFX3P48380 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.31■□□□□ 0.2
RFX3P48380 LINC01451-201ENST00000623792 534 ntBASIC16.31■□□□□ 0.2
RFX3P48380 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RFX3P48380 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RFX3P48380 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
RFX3P48380 AL645608.8-201ENST00000606034 2086 ntBASIC16.31■□□□□ 0.2
RFX3P48380 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.31■□□□□ 0.2
RFX3P48380 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX3P48380 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
RFX3P48380 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.3■□□□□ 0.2
RFX3P48380 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.3■□□□□ 0.2
RFX3P48380 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
RFX3P48380 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.3■□□□□ 0.2
RFX3P48380 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RFX3P48380 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.3■□□□□ 0.2
RFX3P48380 NUS1P2-201ENST00000417358 873 ntBASIC16.3■□□□□ 0.2
RFX3P48380 ATP5G2P1-201ENST00000433580 426 ntBASIC16.3■□□□□ 0.2
RFX3P48380 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.3■□□□□ 0.2
RFX3P48380 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.3■□□□□ 0.2
RFX3P48380 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.3■□□□□ 0.2
RFX3P48380 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.3■□□□□ 0.2
RFX3P48380 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.3■□□□□ 0.2
RFX3P48380 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.3■□□□□ 0.2
RFX3P48380 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
RFX3P48380 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms