Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH5O43196 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC23.81■■□□□ 1.4
MSH5O43196 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC23.81■■□□□ 1.4
MSH5O43196 AC135507.1-201ENST00000607214 561 ntBASIC23.81■■□□□ 1.4
MSH5O43196 AL592071.1-201ENST00000611956 408 ntBASIC23.81■■□□□ 1.4
MSH5O43196 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MSH5O43196 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH5O43196 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH5O43196 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC23.81■■□□□ 1.4
MSH5O43196 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MSH5O43196 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
MSH5O43196 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH5O43196 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH5O43196 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.81■■□□□ 1.4
MSH5O43196 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC23.81■■□□□ 1.4
MSH5O43196 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 TEX21P-204ENST00000641479 1693 ntBASIC23.8■■□□□ 1.4
MSH5O43196 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC23.8■■□□□ 1.4
MSH5O43196 RPS3AP53-201ENST00000454716 778 ntBASIC23.8■■□□□ 1.4
MSH5O43196 AF186996.4-201ENST00000467186 377 ntBASIC23.8■■□□□ 1.4
MSH5O43196 VENTXP7-201ENST00000475503 772 ntBASIC23.8■■□□□ 1.4
MSH5O43196 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC23.8■■□□□ 1.4
MSH5O43196 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC23.8■■□□□ 1.4
MSH5O43196 GUSBP12-201ENST00000513727 720 ntBASIC23.8■■□□□ 1.4
MSH5O43196 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC23.8■■□□□ 1.4
MSH5O43196 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 AC106730.1-201ENST00000566722 1090 ntBASIC23.8■■□□□ 1.4
MSH5O43196 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC23.8■■□□□ 1.4
MSH5O43196 AC148477.8-201ENST00000624298 468 ntBASIC23.8■■□□□ 1.4
MSH5O43196 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC23.8■■□□□ 1.4
MSH5O43196 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 LIPC-204ENST00000433326 1484 ntTSL 2 BASIC23.8■■□□□ 1.4
MSH5O43196 QRSL1P3-201ENST00000552666 1316 ntBASIC23.8■■□□□ 1.4
MSH5O43196 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH5O43196 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 R3HCC1L-206ENST00000613938 1397 ntTSL 5 BASIC23.79■■□□□ 1.4
MSH5O43196 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
MSH5O43196 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC23.79■■□□□ 1.4
MSH5O43196 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
MSH5O43196 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 BX005214.2-201ENST00000423499 1077 ntTSL 5 BASIC23.79■■□□□ 1.4
MSH5O43196 LINC01284-201ENST00000442994 730 ntTSL 5 BASIC23.79■■□□□ 1.4
MSH5O43196 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
MSH5O43196 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC23.79■■□□□ 1.4
MSH5O43196 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC23.79■■□□□ 1.4
MSH5O43196 AC027176.2-201ENST00000559166 746 ntBASIC23.79■■□□□ 1.4
MSH5O43196 ABR-217ENST00000572441 563 ntTSL 4 BASIC23.79■■□□□ 1.4
MSH5O43196 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC23.79■■□□□ 1.4
MSH5O43196 GPR32P1-201ENST00000601788 811 ntBASIC23.79■■□□□ 1.4
MSH5O43196 AC010240.3-201ENST00000607688 395 ntBASIC23.79■■□□□ 1.4
MSH5O43196 AP000350.5-201ENST00000609825 613 ntBASIC23.79■■□□□ 1.4
MSH5O43196 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC23.79■■□□□ 1.4
MSH5O43196 AL162574.2-201ENST00000614618 657 ntBASIC23.79■■□□□ 1.4
MSH5O43196 AL353770.4-202ENST00000621296 1126 ntTSL 3 BASIC23.79■■□□□ 1.4
MSH5O43196 BX005040.1-201ENST00000622281 1126 ntTSL 5 BASIC23.79■■□□□ 1.4
MSH5O43196 CCNC-219ENST00000627680 896 ntTSL 5 BASIC23.79■■□□□ 1.4
MSH5O43196 OR5AC4P-202ENST00000642086 985 ntBASIC23.79■■□□□ 1.4
MSH5O43196 LTF-203ENST00000426532 2494 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH5O43196 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH5O43196 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH5O43196 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH5O43196 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
MSH5O43196 AC134043.2-201ENST00000624206 2238 ntBASIC23.78■■□□□ 1.4
MSH5O43196 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH5O43196 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH5O43196 OR4B1-201ENST00000309562 930 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms