Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 AC073621.1-201ENST00000392730 636 ntBASIC20.43■□□□□ 0.86
RNF41Q9H4P4 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 AC136632.2-201ENST00000512891 861 ntBASIC20.43■□□□□ 0.86
RNF41Q9H4P4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 AC012640.2-201ENST00000561606 901 ntBASIC20.43■□□□□ 0.86
RNF41Q9H4P4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 PGM5P2-202ENST00000637225 1043 ntBASIC20.43■□□□□ 0.86
RNF41Q9H4P4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF41Q9H4P4 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 AC093525.9-201ENST00000624961 1746 ntBASIC20.42■□□□□ 0.86
RNF41Q9H4P4 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 ELK2BP-201ENST00000415014 1224 ntBASIC20.42■□□□□ 0.86
RNF41Q9H4P4 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 PP12613-201ENST00000424958 2230 ntBASIC20.42■□□□□ 0.86
RNF41Q9H4P4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF41Q9H4P4 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 AC079776.4-201ENST00000511039 504 ntBASIC20.41■□□□□ 0.86
RNF41Q9H4P4 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 AL356488.2-201ENST00000602755 427 ntBASIC20.41■□□□□ 0.86
RNF41Q9H4P4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 AL590787.1-201ENST00000568856 1315 ntBASIC20.41■□□□□ 0.86
RNF41Q9H4P4 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 AC006504.4-201ENST00000592118 1568 ntBASIC20.41■□□□□ 0.86
RNF41Q9H4P4 AL023806.1-201ENST00000603994 1649 ntBASIC20.41■□□□□ 0.86
RNF41Q9H4P4 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms