Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 AL138918.1-201ENST00000568306 659 ntBASIC18.15■□□□□ 0.5
CHD9Q3L8U1 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHD9Q3L8U1 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.5
CHD9Q3L8U1 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.14■□□□□ 0.5
CHD9Q3L8U1 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CHD9Q3L8U1 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 MIR4515-201ENST00000584082 81 ntBASIC18.14■□□□□ 0.49
CHD9Q3L8U1 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 TMEM14DP-201ENST00000422205 345 ntBASIC18.14■□□□□ 0.49
CHD9Q3L8U1 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 API5-211ENST00000534695 560 ntTSL 5 BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 AL590560.3-201ENST00000623350 461 ntBASIC18.14■□□□□ 0.49
CHD9Q3L8U1 AC008267.7-201ENST00000624570 1194 ntBASIC18.14■□□□□ 0.49
CHD9Q3L8U1 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.14■□□□□ 0.49
CHD9Q3L8U1 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 AC084346.2-201ENST00000607097 949 ntBASIC18.13■□□□□ 0.49
CHD9Q3L8U1 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 TEX28P1-201ENST00000613479 1221 ntBASIC18.13■□□□□ 0.49
CHD9Q3L8U1 TEX28P2-201ENST00000617764 1221 ntBASIC18.13■□□□□ 0.49
CHD9Q3L8U1 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 HMGA1P7-201ENST00000406908 502 ntBASIC18.13■□□□□ 0.49
CHD9Q3L8U1 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
CHD9Q3L8U1 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 AC004945.1-201ENST00000416738 983 ntBASIC18.12■□□□□ 0.49
CHD9Q3L8U1 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 AC106886.1-201ENST00000568660 600 ntBASIC18.12■□□□□ 0.49
CHD9Q3L8U1 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHD9Q3L8U1 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms