Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC011676.5-201ENST00000624864 2660 ntBASIC20.07■□□□□ 0.8
SF3A1Q15459 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
SF3A1Q15459 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SF3A1Q15459 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.07■□□□□ 0.8
SF3A1Q15459 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SF3A1Q15459 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.07■□□□□ 0.8
SF3A1Q15459 AC002558.1-201ENST00000488906 803 ntBASIC20.07■□□□□ 0.8
SF3A1Q15459 FAM86EP-206ENST00000510506 987 ntBASIC20.07■□□□□ 0.8
SF3A1Q15459 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.07■□□□□ 0.8
SF3A1Q15459 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.07■□□□□ 0.8
SF3A1Q15459 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.07■□□□□ 0.8
SF3A1Q15459 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.07■□□□□ 0.8
SF3A1Q15459 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SF3A1Q15459 AC084018.2-201ENST00000613093 2607 ntBASIC20.06■□□□□ 0.8
SF3A1Q15459 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SF3A1Q15459 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SF3A1Q15459 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.06■□□□□ 0.8
SF3A1Q15459 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.06■□□□□ 0.8
SF3A1Q15459 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.06■□□□□ 0.8
SF3A1Q15459 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 AL138831.2-201ENST00000606564 490 ntBASIC20.06■□□□□ 0.8
SF3A1Q15459 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.06■□□□□ 0.8
SF3A1Q15459 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.06■□□□□ 0.8
SF3A1Q15459 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.06■□□□□ 0.8
SF3A1Q15459 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SF3A1Q15459 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.06■□□□□ 0.8
SF3A1Q15459 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.06■□□□□ 0.8
SF3A1Q15459 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SF3A1Q15459 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SF3A1Q15459 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SF3A1Q15459 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.05■□□□□ 0.8
SF3A1Q15459 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
SF3A1Q15459 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.05■□□□□ 0.8
SF3A1Q15459 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 MIR1224-201ENST00000408193 85 ntBASIC20.05■□□□□ 0.8
SF3A1Q15459 FAM210CP-201ENST00000445714 574 ntBASIC20.05■□□□□ 0.8
SF3A1Q15459 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
SF3A1Q15459 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.05■□□□□ 0.8
SF3A1Q15459 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.05■□□□□ 0.8
SF3A1Q15459 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.05■□□□□ 0.8
SF3A1Q15459 AC019129.2-201ENST00000609837 1235 ntBASIC20.05■□□□□ 0.8
SF3A1Q15459 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
SF3A1Q15459 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.05■□□□□ 0.8
SF3A1Q15459 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.05■□□□□ 0.8
SF3A1Q15459 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.05■□□□□ 0.8
SF3A1Q15459 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SF3A1Q15459 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SF3A1Q15459 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.04■□□□□ 0.8
SF3A1Q15459 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms