Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AL592309.1-201ENST00000443127 649 ntBASIC17.51■□□□□ 0.39
COL4A3Q01955 KLF2P3-201ENST00000451977 1087 ntBASIC17.51■□□□□ 0.39
COL4A3Q01955 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL4A3Q01955 AC067863.1-201ENST00000494933 530 ntBASIC17.51■□□□□ 0.39
COL4A3Q01955 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.51■□□□□ 0.39
COL4A3Q01955 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.51■□□□□ 0.39
COL4A3Q01955 AC190387.1-201ENST00000551683 408 ntBASIC17.51■□□□□ 0.39
COL4A3Q01955 AC005225.4-201ENST00000557330 545 ntBASIC17.51■□□□□ 0.39
COL4A3Q01955 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.51■□□□□ 0.39
COL4A3Q01955 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A3Q01955 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A3Q01955 LINC01451-201ENST00000623792 534 ntBASIC17.51■□□□□ 0.39
COL4A3Q01955 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.51■□□□□ 0.39
COL4A3Q01955 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
COL4A3Q01955 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.51■□□□□ 0.39
COL4A3Q01955 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A3Q01955 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A3Q01955 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A3Q01955 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.5■□□□□ 0.39
COL4A3Q01955 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A3Q01955 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
COL4A3Q01955 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
COL4A3Q01955 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A3Q01955 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A3Q01955 TFAMP1-201ENST00000412727 736 ntBASIC17.5■□□□□ 0.39
COL4A3Q01955 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.5■□□□□ 0.39
COL4A3Q01955 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.5■□□□□ 0.39
COL4A3Q01955 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.5■□□□□ 0.39
COL4A3Q01955 AP005018.1-201ENST00000525475 301 ntBASIC17.5■□□□□ 0.39
COL4A3Q01955 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.5■□□□□ 0.39
COL4A3Q01955 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.5■□□□□ 0.39
COL4A3Q01955 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A3Q01955 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A3Q01955 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A3Q01955 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.5■□□□□ 0.39
COL4A3Q01955 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
COL4A3Q01955 AC008677.1-201ENST00000519230 1561 ntBASIC17.49■□□□□ 0.39
COL4A3Q01955 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A3Q01955 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A3Q01955 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
COL4A3Q01955 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A3Q01955 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A3Q01955 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A3Q01955 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A3Q01955 MIR943-201ENST00000401286 94 ntBASIC17.49■□□□□ 0.39
COL4A3Q01955 SPDYE14P-201ENST00000442619 822 ntBASIC17.49■□□□□ 0.39
COL4A3Q01955 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A3Q01955 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A3Q01955 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.49■□□□□ 0.39
COL4A3Q01955 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A3Q01955 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A3Q01955 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A3Q01955 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A3Q01955 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
COL4A3Q01955 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A3Q01955 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL4A3Q01955 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A3Q01955 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A3Q01955 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A3Q01955 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A3Q01955 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A3Q01955 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A3Q01955 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A3Q01955 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A3Q01955 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A3Q01955 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A3Q01955 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A3Q01955 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A3Q01955 CNN2P2-201ENST00000443536 909 ntBASIC17.48■□□□□ 0.39
COL4A3Q01955 CNN2P3-201ENST00000450201 906 ntBASIC17.48■□□□□ 0.39
COL4A3Q01955 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A3Q01955 AC125807.1-201ENST00000483097 614 ntBASIC17.48■□□□□ 0.39
COL4A3Q01955 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A3Q01955 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A3Q01955 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A3Q01955 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A3Q01955 AL136317.3-201ENST00000618497 906 ntBASIC17.48■□□□□ 0.39
COL4A3Q01955 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A3Q01955 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A3Q01955 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A3Q01955 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A3Q01955 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A3Q01955 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A3Q01955 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A3Q01955 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A3Q01955 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A3Q01955 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A3Q01955 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A3Q01955 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A3Q01955 AC135050.7-201ENST00000624508 2218 ntBASIC17.48■□□□□ 0.39
COL4A3Q01955 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A3Q01955 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL4A3Q01955 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A3Q01955 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A3Q01955 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL4A3Q01955 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A3Q01955 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A3Q01955 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL4A3Q01955 AC008761.3-201ENST00000624803 892 ntBASIC17.48■□□□□ 0.39
COL4A3Q01955 TUBB3P1-201ENST00000405796 1332 ntBASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms