Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 AL136038.3-201ENST00000561909 1096 ntBASIC13.26□□□□□ -0.29
HLA-DMBP28068 AC005332.1-201ENST00000577698 1310 ntBASIC13.26□□□□□ -0.29
HLA-DMBP28068 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 AL139327.4-201ENST00000612362 153 ntBASIC13.26□□□□□ -0.29
HLA-DMBP28068 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DMBP28068 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC13.26□□□□□ -0.29
HLA-DMBP28068 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 AC016396.2-201ENST00000562575 1417 ntBASIC13.25□□□□□ -0.29
HLA-DMBP28068 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 SPDYE13P-201ENST00000445314 798 ntBASIC13.25□□□□□ -0.29
HLA-DMBP28068 LY6E-213ENST00000522528 606 ntTSL 3 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 NAA38-203ENST00000575071 553 ntTSL 2 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 AC083849.1-201ENST00000615227 514 ntBASIC13.25□□□□□ -0.29
HLA-DMBP28068 AC093458.2-201ENST00000623150 629 ntBASIC13.25□□□□□ -0.29
HLA-DMBP28068 CLN6-214ENST00000636314 442 ntTSL 3 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HLA-DMBP28068 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DMBP28068 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 AC005915.1-201ENST00000624912 2018 ntBASIC13.24□□□□□ -0.29
HLA-DMBP28068 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 COPS8-203ENST00000409334 794 ntTSL 5 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 AC096633.1-201ENST00000422446 749 ntBASIC13.24□□□□□ -0.29
HLA-DMBP28068 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms