Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.59■■□□□ 1.05
COL5A3P25940 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC21.59■■□□□ 1.05
COL5A3P25940 AC241585.1-201ENST00000433527 519 ntBASIC21.59■■□□□ 1.05
COL5A3P25940 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC21.59■■□□□ 1.05
COL5A3P25940 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC21.59■■□□□ 1.05
COL5A3P25940 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC21.59■■□□□ 1.05
COL5A3P25940 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC21.59■■□□□ 1.05
COL5A3P25940 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC21.59■■□□□ 1.05
COL5A3P25940 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 EGFEM1P-202ENST00000431685 1563 ntBASIC21.59■■□□□ 1.05
COL5A3P25940 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.59■■□□□ 1.05
COL5A3P25940 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.59■■□□□ 1.05
COL5A3P25940 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC21.59■■□□□ 1.05
COL5A3P25940 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
COL5A3P25940 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A3P25940 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A3P25940 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
COL5A3P25940 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A3P25940 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A3P25940 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC21.58■■□□□ 1.05
COL5A3P25940 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A3P25940 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC21.58■■□□□ 1.05
COL5A3P25940 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
COL5A3P25940 AC091167.2-201ENST00000579581 588 ntBASIC21.58■■□□□ 1.05
COL5A3P25940 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A3P25940 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A3P25940 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.58■■□□□ 1.05
COL5A3P25940 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A3P25940 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A3P25940 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A3P25940 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
COL5A3P25940 AC063926.2-201ENST00000623766 1308 ntBASIC21.58■■□□□ 1.04
COL5A3P25940 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL5A3P25940 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC21.58■■□□□ 1.04
COL5A3P25940 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL5A3P25940 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.58■■□□□ 1.04
COL5A3P25940 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC21.58■■□□□ 1.04
COL5A3P25940 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.58■■□□□ 1.04
COL5A3P25940 SRP9-204ENST00000619790 377 ntTSL 2 BASIC21.58■■□□□ 1.04
COL5A3P25940 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL5A3P25940 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A3P25940 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC21.57■■□□□ 1.04
COL5A3P25940 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A3P25940 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
COL5A3P25940 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A3P25940 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
COL5A3P25940 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A3P25940 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC21.57■■□□□ 1.04
COL5A3P25940 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A3P25940 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC21.57■■□□□ 1.04
COL5A3P25940 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A3P25940 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A3P25940 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC21.57■■□□□ 1.04
COL5A3P25940 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC21.57■■□□□ 1.04
COL5A3P25940 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC21.57■■□□□ 1.04
COL5A3P25940 IGHV3-62-201ENST00000520057 340 ntBASIC21.57■■□□□ 1.04
COL5A3P25940 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A3P25940 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
COL5A3P25940 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC21.57■■□□□ 1.04
COL5A3P25940 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
COL5A3P25940 AC073592.8-201ENST00000624126 511 ntBASIC21.57■■□□□ 1.04
COL5A3P25940 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC21.57■■□□□ 1.04
COL5A3P25940 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL5A3P25940 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A3P25940 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC21.56■■□□□ 1.04
COL5A3P25940 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
COL5A3P25940 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A3P25940 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.56■■□□□ 1.04
COL5A3P25940 LINC00895-201ENST00000629028 1637 ntBASIC21.56■■□□□ 1.04
COL5A3P25940 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A3P25940 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A3P25940 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC21.56■■□□□ 1.04
COL5A3P25940 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
COL5A3P25940 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A3P25940 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A3P25940 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.56■■□□□ 1.04
COL5A3P25940 AC022144.1-201ENST00000602255 1580 ntBASIC21.56■■□□□ 1.04
COL5A3P25940 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC21.56■■□□□ 1.04
COL5A3P25940 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC21.56■■□□□ 1.04
COL5A3P25940 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
COL5A3P25940 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL5A3P25940 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A3P25940 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC21.55■■□□□ 1.04
COL5A3P25940 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC21.55■■□□□ 1.04
COL5A3P25940 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC21.55■■□□□ 1.04
COL5A3P25940 AC105233.2-201ENST00000523697 349 ntBASIC21.55■■□□□ 1.04
COL5A3P25940 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC21.55■■□□□ 1.04
COL5A3P25940 AF228730.5-201ENST00000530288 346 ntBASIC21.55■■□□□ 1.04
COL5A3P25940 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A3P25940 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC21.55■■□□□ 1.04
COL5A3P25940 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
COL5A3P25940 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms