Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMD1Q9UGP4 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 ANO7L1-203ENST00000602586 1720 ntBASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 AP002414.1-201ENST00000391405 1147 ntBASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMD1Q9UGP4 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
LIMD1Q9UGP4 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.08■□□□□ 0.49
LIMD1Q9UGP4 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LIMD1Q9UGP4 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMD1Q9UGP4 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMD1Q9UGP4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 AC109462.3-201ENST00000573934 613 ntBASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 LINC00628-201ENST00000628516 1289 ntBASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.08■□□□□ 0.48
LIMD1Q9UGP4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 NIFKP4-201ENST00000567275 1192 ntBASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMD1Q9UGP4 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 AC093010.1-201ENST00000473625 1624 ntBASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIMD1Q9UGP4 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms